Oryza glaberrima (African rice): 127772521
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Entry
127772521 CDS
T08853
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127772521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127772521
04121 Ubiquitin system [BR:
ogl04121
]
127772521
03036 Chromosome and associated proteins [BR:
ogl03036
]
127772521
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127772521
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
127772521
Ubiquitin system [BR:
ogl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
127772521
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
127772521
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
127772521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4_2
BRCT_2
zf-HC5HC2H
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
RTT107_BRCT_5
zf-RING_6
zf-HC5HC2H_2
PTCB-BRCT
zf-RING_10
zf-rbx1
PHD_NSD
zf-Nse
Motif
Other DBs
NCBI-GeneID:
127772521
NCBI-ProteinID:
XP_052154416
LinkDB
All DBs
Position
5:complement(22285153..22290882)
Genome browser
AA seq
993 aa
AA seq
DB search
MADTGSLEKMGRELKCPICLSLLSSAVSISCNHVFCNDCLTESMKSTSSCPVCKVPFRRR
EMRPAPHMDNLVSIFKSMEAAAGTNVVSTQEAPVVKLADGSDCVNSGKNSKRSQKSLTRK
RKVTSEMEKNTAKDATASASQPTTKPSFSTNKRIQVKPFPESETPIRAEKIMKPEEPKNN
LNNDVEGKNKAVASGQPGSPSLSPFFWLREQEEQEGCTAETLSETQSLDTPLRHNAPSFS
DIKDSDDEIPSNTTPNSKAAATELFDSEIFEWTQRPCSPELYSTPLKKQSKAKSKLDQIE
EKGDEEDVHIGGSFDKLGNASNAAQLVNTKATKQKRKKTSTSNKNSAKLSNRAEPCIKKS
DANQQGSNRRKSAALKSCQKSSSAVGRNTSGRRNKASSNSKPIHGSSDNSPESYLPKEGL
DVEAPDKPLSERIQNLEKTSRRKGSARKLEMAGKTISDTTEKNSEPRSKRVRRMSDHAIA
KPVEVPSGSGNETEIPQLHTLTKGSIQRKSSNARRHSKVCGEQEGKNKLENTTMTPIILH
GKCQNKEAVCTAPSVRTASVKYKQAKFSEQPDCFGTENFGNLQACPARNVLLKKCEVSTL
KVSCAFCQTDVITEESGEMVHYQNGKQVPAEFNGGANVVHSHKNCLEWAPDVYFEDDSAF
NLTTELARSRRIKCACCGIKGAALGCFEMSCRRSFHFTCAKLIPECRWDNENFVMLCPLH
RSTKLPNENSEQQKQPKRKTTLKGITGFSRSSQIGSNQDCGNNWKWPSGSPQKWVLCCSS
LSSSEKELVSEFAKLAGVPISATWSPNVTHVIASTDLSGACKRTLKFLMAILNGRWIVSI
DWVKTCMECMEPIDEHKFEVATDVHGITDGPRLGRCRVIDRQPKLFDSMRFYLHGDYTKS
YRGYLQDLVVAAGGIVLQRKPVSRDQQKLLDDSSDLLIVYSFENQDRAKSKAETKAADRR
QADAQALACASGGRVVSSAWVIDSIAACNLQPL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggcggacacggggagcctggagaagatggggcgagagctcaagtgccccatctgcctg
agccttctcagttcggcggtatccatctcctgcaaccacgtcttctgcaatgattgcctc
acggaatcgatgaaatccacgtcgagctgccccgtgtgcaaggtcccgttccgccgacga
gaaatgcgaccagcacctcacatggacaatctggtcagcattttcaaaagcatggaggct
gcagcaggtaccaatgttgtctcaacacaggaggctcctgtggtaaaacttgcagatgga
tcagattgtgtcaacagcgggaaaaattccaaaaggtcacaaaaatcattgacacgaaaa
aggaaggtaacatccgagatggaaaaaaatacagcaaaggatgctacagcttctgcatcc
caacctactacaaagccttccttctctactaacaaaagaatacaagtgaaaccattccct
gaatctgagacaccaataagagctgagaagattatgaagcctgaagagccaaaaaataat
ctgaataatgatgttgaaggaaagaataaagcagtggcatcgggtcaacctggaagtcct
tcattgtcaccctttttttggctaagggaacaagaagaacaagaaggctgtaccgctgag
acgttaagtgaaacgcaatctttagacacacccttgcgtcataatgcaccttcttttagc
gatattaaagattctgatgacgaaatcccttcaaatacaactccaaatagcaaagctgcg
gctacagaactctttgacagtgaaatatttgaatggacccagagaccatgctctcctgaa
ttgtattccactccattgaaaaagcagagtaaagctaagagtaaactagatcaaattgaa
gagaagggtgatgaagaagatgtgcatattggtggttcatttgataagctgggtaatgca
agtaatgcagctcagcttgtcaatacaaaagcaacaaagcagaagagaaagaaaacaagt
accagtaacaaaaacagtgcaaaattgtccaatcgtgctgagccctgcataaaaaagtct
gatgccaatcaacaaggttcaaatagacgtaaaagtgctgccctaaaatcttgtcagaaa
agcagcagtgctgtagggaggaatacttcaggtagaagaaacaaggcctctagcaacagc
aagccaattcatggctctagtgataactccccagagtcatatcttcctaaggagggtttg
gatgttgaagcacctgacaaacccctttctgaaaggattcaaaacttggagaaaactagt
cgacgaaagggaagtgcaaggaagctggaaatggcagggaaaactatttcagatactaca
gagaagaatagtgagccaagaagtaagagagtcagaagaatgtctgaccacgctatagct
aaaccggttgaagttccttcaggatctggaaatgaaacagaaataccacagcttcacacc
ctcacaaaaggcagcattcaacgcaaatcctccaacgctagaagacatagcaaagtttgt
ggagaacaggaaggtaagaataaacttgagaacacgacaatgacacctattattttacat
gggaaatgccaaaataaagaggcagtatgtacagctccttcagtaaggactgcatctgtt
aagtacaagcaagcaaaatttagcgaacaaccagattgttttggaacggagaactttgga
aaccttcaagcatgccctgcacgtaatgttttactgaagaagtgtgaggtatctactttg
aaggtttcctgtgctttctgccagaccgatgtcatcacagaggagtctggagagatggtt
cattatcaaaatgggaaacaagtccctgcagagttcaatggaggagccaatgtggtgcac
tctcacaagaactgccttgagtgggctcctgatgtctacttcgaagatgattctgccttt
aatcttacaactgaattggcgagaagcagacggatcaaatgtgcttgctgtggaattaaa
ggagctgcacttggatgctttgagatgagttgtcggagaagtttccacttcacctgtgct
aaactaatcccagaatgcagatgggataatgaaaattttgtgatgttatgccctctacat
cggtctacaaagttacccaatgaaaattctgaacagcaaaagcaacctaaaaggaaaaca
acactcaaaggaataactggcttttccaggtcatctcaaataggatccaatcaagattgt
ggtaataactggaaatggccatctggatcaccacagaagtgggttctctgctgctcatca
ctttctagttctgagaaggaacttgtatcagaatttgcaaagttagctggcgtgcctatt
tcggcaacttggagcccaaatgttacccatgttattgcatcaactgatctctctggtgct
tgcaaacggacgctgaagtttctcatggcaatcttgaatggcagatggattgtctccata
gattgggttaaaacttgcatggagtgcatggaaccaattgatgagcacaaatttgaagtc
gctactgatgttcatgggatcactgatggtcctaggttaggaagatgcagggttattgac
aggcaacctaagctgttcgacagcatgaggttctacctccatggggactacacaaaatcc
tacagaggctacctgcaagatctcgtggttgcagcaggtggaatagttcttcagaggaag
cccgtatcaagagaccagcaaaagcttcttgatgacagctctgacctcctcatcgtttac
agcttcgagaatcaagatagggcaaaatccaaggccgaaaccaaggctgctgatcgcagg
caggctgatgctcaggctcttgcttgcgcttctggaggcagagttgtgagcagtgcatgg
gtgattgactcaattgcagcctgcaatctgcaacctctttga
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