Oryza glaberrima (African rice): 127773218
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Entry
127773218 CDS
T08853
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
ogl
Oryza glaberrima (African rice)
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogl03041
]
127773218
Spliceosome [BR:
ogl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
127773218
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RL
RRM_PARP14_3
P_C10
Casein
Motif
Other DBs
NCBI-GeneID:
127773218
NCBI-ProteinID:
XP_052155203
LinkDB
All DBs
Position
5:complement(18680503..18686184)
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AA seq
445 aa
AA seq
DB search
MAEPSKVIHIRNVGHEIGEADLLQLLQPFGNVSKIVMLRAKNQALLQMQDLHNSVSALQY
YSTVQPSVRGRNVYMQFSSHQELTTDQNSHGRNSDQESEPNRILLVTIHHMMYPITVEVL
HQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHGRNIYDGCCQLDIQYSNL
SELQVHYNNDRSRDFTNPSLPTEQRPRASQQQGYPDPGGLYAFQQPGASYAQMGRAAMIT
AAFGGTLPPGVTGTNERCTLIVSNLNNDKINEDKLFNLFSLYGNIVRIKILRNKPDHALV
EMADGFQAELAVHYLKGAVLFAKKLEVNYSKYPNITSAPDAHDYTTSSLNRFNSNVIKNY
RHCCAPTKMIHISALPQEITEDAILNHVSEHGSVVNTKLFEVNGKRQALIQFESEEEATE
ALVSKHATSLEGNTIRISFSQMQSI
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcggagccgtctaaggtgatccacatccggaacgtcgggcacgaaatcggtgaggct
gatctgctgcagctattgcagccgtttggcaatgtttccaagatagtcatgctgcgtgcc
aagaatcaggcacttctccaaatgcaagacttgcataattcagtgagtgcgctgcaatac
tacagtactgttcaacctagcgtaaggggaaggaatgtgtacatgcaattttcgtcccac
caagaacttaccactgaccaaaactctcatggacgaaattcagatcaggagtcagaaccc
aaccgaatcctcttagttactattcaccacatgatgtatcctataactgtggaggttcta
catcaagttttcaaagcttatggatatgtggagaagattgtcacatttcagaagtcagct
ggttttcaagcccttatccagtatcagtcactccaagaagctatggatgcatttggtgct
ttgcatggaaggaacatatatgacggttgctgccagctagacattcaatattcaaatcta
agcgaactgcaagtccattacaacaatgatcgttctagggatttcacaaacccatcattg
cctacagaacagcgtccaagggcctctcagcagcaaggctatccagatccaggtggtctt
tatgccttccaacaaccaggagcttcatatgcacagatgggaagagctgcaatgatcaca
gctgcattcggtggaactttacctcccggggtgactggtaccaacgaacgttgcacgcta
atagtcagtaatttgaacaatgataaaataaatgaagataagcttttcaatctgttctct
ctatatgggaacatagtccgaatcaaaatactgcgcaacaaaccagatcacgcccttgtt
gaaatggctgatgggtttcaggctgagctagctgtgcattatctgaagggggcagtgcta
tttgcaaagaagctcgaggttaactactcaaagtacccaaatataacaagcgctcctgat
gcgcacgactacacgacttcaagtcttaacaggttcaacagcaatgtaatcaagaactac
cgtcactgctgcgctccaaccaaaatgatccacatttcagccctcccacaagagatcacg
gaggatgcgattcttaaccatgtttcagagcatggttctgttgtaaacacaaagctgttt
gaggtgaacggcaagaggcaggcgctcatccagttcgagagcgaagaggaggcgaccgaa
gcccttgtatcaaaacatgccacctcgctggagggtaacacgatcaggatctcattctcc
cagatgcagagcatatag
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