Oryza glaberrima (African rice): 127773640
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Entry
127773640 CDS
T08853
Name
(RefSeq) transcription initiation factor TFIID subunit 12
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127773640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127773640
03036 Chromosome and associated proteins [BR:
ogl03036
]
127773640
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
127773640
Coactivators
SAGA/TFTC/STAGA complex
127773640
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
127773640
STAGA complex
127773640
TFTC complex
127773640
SAGA complex
127773640
SLIK complex
127773640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
Cwf_Cwc_15
WD40_2
MDM10
Motif
Other DBs
NCBI-GeneID:
127773640
NCBI-ProteinID:
XP_052155739
LinkDB
All DBs
Position
1:complement(33970682..33975283)
Genome browser
AA seq
550 aa
AA seq
DB search
MDAPPPAQPDAAAAAPAAPPTSTSASAPSSAPQPNPTPSASTAAPPTPDTTLAPAPNPTP
APVQTLETPAPSPASARPPVPRMRPPYTHLASPITMSSSPATGAASSSSASAPAATSASS
SAMPRGGVALGLPAHPRAPQTPVGYTGFVPPPTLAAQFGSMHRGPDQPPPSSTQPRQPSP
GIQNIGTVGSINTSQVRPGAISSLPQQTRPNFPSSTAPSPSDSQIASSQKTPIQALARPP
SMASSPSMPLQQTPPNVSAPLRPPQHRPHPRPYHAPAISHPQNALLTQQQQKLPQHQHLQ
QQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQQKLQQQQQQQQKLQQQQQQNQPQHSSQQS
QQTTTLRNQQQISQQQTARTPVSMAQKLDSPAVLKATNVQSGDMASVDVDAGGSGNRLLS
KRSIHELVAQIDPSEKLDPEVEDVLIDIAEDFVESVATFACSLAKHRKSSILEAKDVLLH
AERSWNITLPGFSGDEIKLYKKPHVNDIHRERLTLIKKSMASESNAKGSAAQAAANQKNQ
TPKPPATGSP
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgcctccgcccgcgcaaccggacgccgccgcggcggcgccggcagcgccgccc
acttcgacctcggcttctgccccctcatccgcgccacagcctaatcccaccccttccgcc
tccactgccgcgccgcccacccccgacaccacccttgccccggcccccaatcccacccca
gcccccgtccaaaccctagaaaccccagctccaagccccgccagtgcgcggccgccggtg
ccccgcatgaggcctccgtacactcacctggcctcgcccatcacgatgtcctcctctccg
gccacgggcgcggcctcttcctcctctgcttccgctccggccgccacctctgcgtcctca
tctgccatgccacggggaggtgtagcccttgggctaccagcgcacccgcgtgcgccgcag
acgcccgtcggctacaccgggttcgtgccgccgccgacactcgccgcgcagttcggctcg
atgcatcggggtcctgaccagcctccaccatcctctacacagcctaggcagccttcccct
gggatccaaaatattgggacagttggttccattaacacatctcaggtgagaccaggagca
atctctagtctgccacagcagacaaggccaaattttccatcttcaacagcaccatctcca
tctgatagccagattgcaagttcacaaaaaacccccatccaagctttggcaagaccacca
tctatggcttcttccccctcgatgcctttacagcaaactccgccaaatgtatctgctcca
cttaggccccctcaacataggccacatccaagaccataccatgctcctgcaatttcgcac
ccacagaatgcacttttaacacagcagcagcaaaaactaccacaacatcaacatttgcag
caacagcagcagcagcagcagcaacaaaaactacagcaacagcagcagcagcaacaacaa
aaactacagcagcagcagcagcagcagcagcaacaaaagctacagcagcagcagcagcag
caacaaaaactgcagcagcagcaacaacaaaatcagccacaacattcctcgcagcaaagt
caacagactacaacactcagaaaccagcaacaaatttctcagcagcaaactgctcgtacc
cctgtctcaatggctcagaagctagattctcctgctgtactaaaagctactaatgtgcaa
tctggagacatggcttcggtcgatgtggatgctggaggatctggtaatcgactgctttcc
aagaggagtatacatgaattagttgcacagattgatccttcagaaaagcttgatcctgaa
gttgaagatgttcttattgacattgcagaagattttgttgaatctgttgcaacatttgct
tgttctttagcaaaacatagaaagtcaagcattttagaagcaaaagatgtactcctccat
gcagagagaagctggaatattaccttgccaggcttcagtggagatgaaataaaactgtac
aagaagccgcatgtcaatgatattcacagggagaggcttactctgatcaagaagtcaatg
gccagcgaaagtaacgcaaagggctctgctgcgcaagctgcagctaaccagaaaaatcag
acacccaagccacctgccacaggctctccatga
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