Oryza glaberrima (African rice): 127773660
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Entry
127773660 CDS
T08853
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127773660
09123 Folding, sorting and degradation
03018 RNA degradation
127773660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127773660
03041 Spliceosome [BR:
ogl03041
]
127773660
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127773660
mRNA degradation factors
5'-3' decay
Lsm complex
127773660
Spliceosome [BR:
ogl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
127773660
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
127773660
NCBI-ProteinID:
XP_052155758
LinkDB
All DBs
Position
5:26117733..26119733
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AA seq
99 aa
AA seq
DB search
MASAGPGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTREGVQQLVL
GLYIIRGDNISVVGEVDEELDARLDLSNLRAHPLKPVIH
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgccggcccggggctcgaatcgctcgtcgaccagatcatatccgtcatcaca
aacgatggccgcaacattgtggggacactcagaggattcgatcaagccaccaacatcatc
ctcgatgagtcccatgagagggtctattctaccagggagggagtgcaacagcttgttctt
gggttgtacatcataaggggcgacaacatcagcgtggtgggggaggtggatgaagagctg
gatgcgaggctggatctatcgaatctgagagcgcacccgctgaagcccgtgatccactaa
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integrated database retrieval system