Oryza glaberrima (African rice): 127773677
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Entry
127773677 CDS
T08853
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127773677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127773677
03012 Translation factors [BR:
ogl03012
]
127773677
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127773677
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127773677
Translation factors [BR:
ogl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127773677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
R3H
DEAD
OB_NTP_bind
HA2_N
nSTAND3
Ank_2
AAA_19
Ank_5
ATPase
AAA_22
ResIII
AAA_23
AAA_16
Rad17
AAA_7
AAA_11
ABC_tran
PhoH
AAA_25
Motif
Other DBs
NCBI-GeneID:
127773677
NCBI-ProteinID:
XP_052155777
LinkDB
All DBs
Position
1:29755757..29765898
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AA seq
1309 aa
AA seq
DB search
MAHTSGVAARLNLVFMGRPLARSVQPPPSGPRFSGRAQRRRGSNEATACGKGRSRAGRAA
SPDVVATKPPPLHDEEEEEGGRMVRRGRKGKDAAAGAGGTGGRGGGAGRGGGRGGSGGGG
GGGGGGGGVREATLVRVSKVLEDFQASDAQVYKFEPGISKQERAAIHEMCRKMGMISKSS
GNGERRCLSVYKRKQNQGLETEEGPSHLGFSVEARNVLQDLFMHYPPDDAELNGHTVRNS
SDKAVKIQWKPDGAFCRPALRKQDILKKVEMLASKVNKSEQLRKIVQDRSKLPISSYKDA
ISSTLENHQVVLISGETGCGKTTQVPQYILDHMWGKGESCKIVCTQPRRISAISVAERIS
AERGESVGDTVGYKIRLESKGGKNSSIMFCTNGVLLRLLIGRVTNISKEQNQKRSFDDAV
TGITHIIVDEIHERDRFSDFMLAILRDLLPLYPHLRLVLMSATIDAERFSNYFSGCPFIQ
VPGFTHPVKTFYLEDVLSILQSVGDNHLDPTTDDLKQSSLLTDDYKSSMDEAINLALDND
EFDPLLELISGEQNQEIFNYQHSETGVTPLMVLAGKGQVGDICMLLSFGVDCSTRDHDGK
SALDWAEQGNQQEVCEVIKKHMECGSAKLTEENELLNKYLATINPEHIDTVLIERLLRKI
CVDSNEGAILVFLPGWEDINQTRERLLASPFFQDSSKFLVLSLHSMIPSSEQKKVFKRPP
AGSRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHSSWVSKANARQRQG
RAGRCQPGTCYHLYSRFRAASLLEYQIPEIKRMPIEELCLQVKLLDPNCRIADFLRKTLD
PPVPETVRNAITVLQDLGALTQDEQLTELGEKLGSLPVHPSTSKMLLFGILMNCLDPALT
LACAADYRDPFLLPMAPDERKRAAAAKVELASLYGGYSDQLAVVAAMDCWRRAKDRGQEA
QFCSKYFVSSNTMNMLSNMRKQLQNELAQRGFVPVDASACSLNARDPGIIRAVLMAGAYP
MVGRLLPPRKNTRRAVIETASGAKVRLHPHSCNFNLSFRKTSGNPLVIYDEITRGDGGMY
IKNSSVVGSYPLIILATEMVVAPPEDDDSDEEDGDSSEDETEKVTLGQHKEIMSSPDNSV
SVVIDRWLRFDATALDVAQIYCLRERLASAILFKVKHPQDVLPPDLGATMYAIACILSYD
GLPAMITSDDVATSQGSNQSSAESSRFSQGRRVGYIPPGGFLMSLLSDKPLNAPHFQKSF
NHPDGASGHIRSSRTSVGRFDQSRHPQRNNSGPGSSAARTFKRQRNGAQ
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atggcccacacgtcaggcgtggccgcccgtctgaacctggttttcatgggccgcccgctc
gcacgcagcgtgcagccaccgccatctgggcctaggttttccgggagagcgcagcggcgg
cgcggaagcaacgaagcgaccgcttgcgggaagggccggagccgagccggccgcgccgcc
tcgcccgacgtcgtagcaaccaagccacccccgctccacgacgaggaggaggaggaggga
ggaaggatggtgaggagagggcggaagggcaaggacgcggcggctggcgccggcggcacc
ggtggcagaggcggcggtgctggcagaggaggcggcagaggaggaagcggcggcgggggc
gggggcgggggcgggggagggggtgttcgggaggcgacgctggtgcgcgtctcgaaagtg
ctcgaggacttccaagcctccgacgcccaggtgtacaaatttgaacctggcatatcgaaa
caagagcgagcggcgatacatgagatgtgtagaaaaatgggcatgatatccaaaagttct
gggaatggggaacgacgatgcctatctgtttacaaaagaaaacagaaccagggccttgaa
acagaagaaggacctagccatcttggattttctgtggaagcgagaaatgttttgcaagat
ctatttatgcattatcccccagatgatgctgagctaaatgggcatactgtcaggaattct
agtgataaggctgtaaagattcagtggaagccagatggtgcattttgtaggccagcattg
cgcaaacaggatatattgaagaaggtggagatgcttgcatcgaaagtaaataaatccgaa
cagttgaggaagattgtccaagatagatctaaacttccaatttcctcatacaaggatgca
atttcttcgactttagagaatcaccaggtggttcttatttctggagaaacaggatgtggt
aaaacaacacaggttcctcaatatatcttggatcatatgtggggtaagggtgaatcatgt
aagattgtatgcactcaaccaaggcgaatatcagctatctcagttgctgagagaatctct
gcggaaagaggagagtctgtgggtgacacagttgggtataagatacgcttggagtcaaaa
ggagggaagaactcatcaatcatgttctgcacaaatggtgttcttttgaggctattgata
ggcagggtaactaatatttcaaaagaacaaaatcagaaacgctcatttgatgatgcagtt
actgggataacacatattattgtggatgaaatccatgaaagggacaggttttcagatttc
atgttggctattctaagagatttgctgccgttgtatcctcatctgcgtttggtactcatg
agtgcaacgattgatgctgagcggttctcaaattatttcagtggatgcccatttattcaa
gtcccagggtttacccatcctgtcaaaactttctatttggaggatgtgctttctattttg
caatctgtaggcgataatcatcttgatcctacaacagatgatctgaaacagagcagtttg
ttaacagatgattacaaaagctcaatggatgaagccattaacctagctttggataatgat
gaatttgatcctcttcttgagcttatttctggtgagcagaaccaagaaattttcaattac
cagcactcagaaactggcgtgacacctttgatggttcttgctggaaaaggtcaggttggg
gacatttgcatgcttctatcatttggggtggattgttctacacgggatcatgatggaaaa
tctgcattagattgggcagaacaagggaatcagcaagaggtttgcgaagttattaagaaa
catatggaatgtggttcagcaaagttaactgaagagaatgagctgctcaataaatacttg
gcaaccatcaatcctgagcacatcgatactgtgctaatagaacggttgctcagaaaaatt
tgtgttgattccaatgaaggagctatcttggtgtttcttcctgggtgggaagatataaat
caaacacgggaaaggttgcttgcttctcccttctttcaggattcgtcaaagtttcttgtg
ttgtcactccattccatgatcccatcttcggagcagaaaaaagttttcaagcgtccacca
gcaggatctcgtaaaataattctctcaaccaacatagcagagactgctgtgacaattgat
gacgtcgtatttgtcatagatagtgggagaatgaaagagaaaagttatgatccatataat
aatgtctcaacacttcattcttcctgggtttcaaaagctaatgccagacaacgtcaaggg
cgtgcgggtcgttgtcagccaggaacgtgctaccatctctactctagatttcgagcagcc
tcattactggaataccaaatccctgaaataaagaggatgcctattgaggaactatgttta
caggtcaaactgcttgatccgaactgcagaattgcagactttttaaggaaaactttggac
cctccagttccagaaactgtaagaaatgctatcaccgtacttcaggatcttggtgctttg
actcaagatgaacaactgacagagttaggggaaaagttgggctcccttccggtccatcca
tctacaagcaagatgctcttgtttggtatattaatgaattgcctagatccggcgttgaca
ttggcatgtgcagcagattatagagatcctttcctccttccaatggctccagatgagagg
aaaagggctgctgcagccaaagttgagcttgcttcattgtatggtggatacagtgatcag
cttgcagttgtagcagcaatggactgttggagacgtgccaaagataggggccaagaagct
caattttgttccaagtattttgtgtcttctaacaccatgaatatgctttcaaacatgagg
aaacagcttcagaatgaactagcccaaagaggatttgttcctgtagatgcatctgcatgc
agcttaaatgctagagatccaggtatcattcgtgctgtccttatggccggtgcttatcca
atggtagggagattgcttccccctcgcaaaaatactagaagagctgtcattgaaacagca
agtggtgccaaagttcgactgcatccacattcttgcaactttaacttgtctttccgtaag
acttctgggaacccattagtgatatatgatgagatcactcgaggcgatggtggaatgtac
ataaaaaactcttcggttgttgggtcctatcctttaattattcttgctacggaaatggtt
gttgctccacctgaggacgatgatagtgatgaagaggatggggattctagtgaggatgaa
actgagaaagtcactttgggacaacataaagagataatgtcttctcctgataactctgtt
tcagttgttattgatcgatggcttcggtttgatgctacagctcttgatgttgctcaaata
tactgccttagggagcgcctagcatcagctattcttttcaaagtcaaacatccacaggat
gtcctcccacctgatcttggagcaactatgtatgctattgcgtgcatcctatcatacgat
ggcttgcctgctatgattacatctgatgatgttgctacaagtcagggttcaaaccaaagt
tcagctgaatcaagcagattctctcagggtcgtagagtcggttatattccacctggcggt
ttcctcatgtctttgttatcggataaacctcttaatgcgcctcattttcagaagtccttt
aatcatccagatggagcttcagggcatattcggtcatcgaggacctccgtcggtagattt
gatcagtctcgccatcctcaacgtaataattctggacctgggagttcagcagcacggact
ttcaaaagacagcgcaacggtgcacagtga
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