Oryza glaberrima (African rice): 127774083
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Entry
127774083 CDS
T08853
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127774083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127774083
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
127774083
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
ATG17_like
Polo_box_3
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
127774083
NCBI-ProteinID:
XP_052156316
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All DBs
Position
5:9460000..9468738
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AA seq
942 aa
AA seq
DB search
MEGDDFLPEGGKLPELKLDARQAQGFISFFKKLPQDSRAIRLFDRRDYYTAHGENATFIA
KIYYHTMSALRQLGSNSDGLSSVSVSKTMFETIARNLLLERTDRTLELYEGSGSSWRLTK
SGTPGNIGSFEDILFANNDMQDSPVTVALFPVFQEGQLYVGLSFVDLTNRKLGLSEFPED
SRFTNVESALVALGCKECLLPADCEKSIDLKPLQDAITNCNVLLTERKKVEFKSRDLVQD
LGRIIRGPVEPVRDLVSQFDYALGALGALVSYAELLADDTNYGNYTIEKYSLDRYMRLDS
AAVRALNIAEAKTDVNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQ
AFVEDPELRQGLRYQLKRMSDIDRLTHALRKRTANLQPVVKLYQSCIRVSYIKNVLQQYD
GSFSALIRTKFLNSLDEWLTEDRFGRFASLVETAIDLDQLENGEYRISPRYSSDLAVLKD
ELSEVENHINNLHKHTAADLDLTIDKQLKLEKGQLGHVFRISKKDEQKVRKKLTSNYIII
ETRKDGVKFTSSKLKKLGDQYQALLGEYTSCQKKVVDDVVRVSASFSEVFENFAAILSEL
DVLQSFADLATSSPIPYVRPEITASEEGDIILEGSRHPCLEAQDGVNFIPNDCTLVREKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGV
STFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFAT
HFHELTALGHKSGDEHQHVPNLGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVVALAKSKAEELEDFSTAPNFSDDSKDEVGSKRKRVFSPDDVTRGAARARLL
LEELASLPLDEMDGTKAAETVTKLKSDFEKDAADNPWLQQFL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgacgatttcttgccggagggcggcaagctccccgagctcaagctagatgcg
aggcaagcgcagggcttcatctctttcttcaagaagctgccgcaggattcgagggctatt
cgtctcttcgatcggcgggattattacactgctcatggagagaatgccacattcattgca
aaaatatactatcacacaatgtctgccttacgccaattaggtagcaactctgatggactc
tcaagtgtcagtgtgagcaagactatgtttgagaccatcgctcgcaaccttttgttagag
aggacagaccgtacattggaactctatgagggaagtgggtctagttggaggttaacaaaa
tctggaacacctggaaatattggcagttttgaagatattctgtttgcaaacaatgacatg
caagattctccggtaactgttgcattgtttcctgtgttccaggaaggacaactatatgta
ggtcttagttttgttgatttgacaaacaggaagcttgggttgtctgagtttcccgaagat
agtcgattcacaaatgtagagtcagcccttgttgcattaggttgcaaggagtgtcttctc
ccagcagattgtgagaaatctatagatttgaagcctcttcaggatgctatcactaactgc
aatgttctattaactgaaagaaagaaggttgaatttaaatccagagatcttgtgcaggat
cttggtagaataatcagaggtcctgttgagccagttcgtgatcttgtatctcagtttgac
tatgcactgggtgcccttggagctctagtttcatatgctgagttgctagcagatgataca
aactatggaaattacacaattgagaaatacagtttggaccgctacatgcgtcttgattct
gctgctgtgcgagcattgaatattgccgaagctaaaactgatgtaaacaagaacttcagt
ttgtttggtttgatgaacagaacctgtacagtaggtatgggaaagagactgcttaacaga
tggctgaaacaacctctgctagatgtaaatgaaatcaataacagattagatatggttcag
gctttcgtagaagatccagagcttcgtcagggacttaggtaccaactcaaaagaatgtcg
gacattgaccgtctgacacatgctctgcggaagagaacagccaatctgcagcctgttgtc
aagctctaccagtcctgcattagagtctcatacatcaagaatgttcttcaacaatatgat
ggcagtttttctgcgctgataaggacaaagtttcttaattctttagatgagtggctgaca
gaggataggtttggtaggtttgcttctcttgttgagacagctattgaccttgatcaactt
gagaatggtgagtataggatatctccccgatattcttctgatttggctgtgctgaaggat
gagctttctgaagttgaaaatcacatcaacaatttgcacaagcatacagctgctgatctg
gatcttactattgataagcaattgaagctagaaaaagggcagcttggccatgtgttcaga
atctcaaagaaagatgaacagaaggttaggaagaaactcactagcaattacataatcata
gaaactcgtaaggatggtgtgaagttcacaagctccaagcttaaaaagttaggcgaccaa
taccaggcactgcttggtgagtacacaagttgtcagaaaaaggttgttgatgatgtagta
agagtttcagcctccttctcagaggtatttgaaaactttgctgcgatactatctgagttg
gatgttttacaaagttttgctgatttagcaacaagttccccaattccttatgtaagacca
gaaatcacagcatcggaggaaggagatatcattttagaaggtagcagacatccttgtctg
gaggcccaagatggtgttaactttataccaaatgattgcactttggtgagagaaaaaagt
tggtttcagatcatcactgggccaaacatgggtggaaagtccacttttatacgacaggtt
ggtgtgaatgtcctgatggcacaagttggatcgttcgttccatgtgatcgggcgagcatt
agtgtgagagattgtatttttgctcgtgttggtgctggtgattgccagctacgtggtgtt
tcaacctttatgcaagaaatgcttgaaacagcatccatcttgaaaggtgcatcggacaag
tctcttattattattgatgagttggggcgtggaacttccacatatgatggatttggtctt
gcatgggctatctgtgagcatcttgtggaagtgactagagcacctacgttgtttgccacg
cattttcatgaattaactgcattaggacacaaaagtggtgatgagcaccaacacgttcca
aatttgggaattgcaaattaccatgtgggtgcacatatagacccatcaagtcggaagtta
actatgctttataaggttgaacccggtgcatgtgaccaaagctttggtatccacgttgca
gaattcgctaattttccagaagctgttgttgctcttgcaaaaagcaaagcagaagaatta
gaagatttttcaactgcgcccaatttttccgatgattcaaaagatgaggttggatcaaaa
cgcaagagggtatttagcccagacgatgtgactagaggagctgctcgcgctcgccttttg
ttggaggaattggcctcattgcctctagacgagatggatggcaccaaggccgcagaaacc
gtcaccaaactgaaatccgacttcgagaaagatgcagctgataatccttggcttcagcaa
ttcctttga
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