Oryza glaberrima (African rice): 127774605
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Entry
127774605 CDS
T08853
Name
(RefSeq) F-box protein SKP2A-like
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127774605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogl04121
]
127774605
Ubiquitin system [BR:
ogl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
127774605
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Motif
Pfam:
LRR_6
LRR_At5g56370
LRR_4
F-box-like
LRR_Zer-1
LRR_8
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
127774605
NCBI-ProteinID:
XP_052156834
UniProt:
I1PVT5
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All DBs
Position
5:18175867..18179708
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AA seq
376 aa
AA seq
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MVSGRSANGELDACFRSLMLSIGSGRGQAEGGGAMPTLSGWKDLPIELLLRIMSIVGDDR
MLVVASGVCTGWRDALGWGLTNLSLSRCQQNMNNLMISLAHKFTKLQVLTLRQNIPQLED
SAVEAVSSYCHDLRELDLSRSFRLSDRSLYALARGCPQLTKLNISGCSNFSDTALTYLTF
HCKNFKCLNLCGCGKAATDRALQAIARNCGQLQSLNLGWCEDVTDKGVTSLASGCPDLRA
LDLCGCVLITDESVIALATGCPHLRSLGLYYCQNITDRAMYSLANSRVKSKRRRWDSVRS
SSSKEEDGLANLNISQCTALTPPAVQAVCDSFPALHTCPGRHSLIISGCLSLTSVHCACA
LHPHRAGRTMVPSHAY
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggttagtgggaggtcagcaaatggggaattggatgcatgcttcagaagcctcatgctt
tcgatcggcagcgggagggggcaggctgaaggtggtggtgcaatgccaaccttgtcaggc
tggaaggaccttcctattgagctgcttctgcggatcatgtcgatagttggagatgaccgg
atgcttgtcgtggcatccggtgtttgcactggctggcgcgacgcgctgggatgggggctt
actaatctttccctctcacggtgccagcagaacatgaataacttaatgatatcacttgct
cacaagttcacgaagcttcaagttctcactcttcgccagaacatacctcagcttgaagac
agtgcagtagaggccgtttccagctactgtcatgatctacgtgagttagaccttagcaga
agttttaggcttagtgaccgttccttgtatgcattagcccgtggctgccctcagcttaca
aaattaaacattagtggatgttccaacttcagtgacactgccttgacctatcttactttc
cactgtaaaaattttaagtgcttgaatctatgtggttgtgggaaggcagcaaccgacaga
gctttgcaggccatagcccgtaattgcggccagctgcaatcattgaacttaggttggtgt
gaggatgtcacagataagggagtgaccagcttggcatcagggtgccctgatctcagggct
ctggacttgtgtggttgtgttcttataacagatgagagtgtgatcgctcttgccactggg
tgtccacacctgcgatctttaggcttgtactactgccagaacatcaccgaccgagccatg
tactccctcgcaaacagccgggtcaagagcaaacgcaggaggtgggacagtgtgaggagc
agcagctctaaggaagaagacggtctcgcaaacctgaacatcagccagtgcaccgccctg
acacccccagcggtccaggcggtctgcgactccttcccggccctccacacttgccctggg
aggcactccctgatcatcagtggctgcctcagcctgacgtctgtccactgcgcctgcgcc
ctccacccgcaccgggctggaagaaccatggtgcctagccacgcatactga
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