Oryza glaberrima (African rice): 127774672
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Entry
127774672 CDS
T08853
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127774672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127774672
04121 Ubiquitin system [BR:
ogl04121
]
127774672
03036 Chromosome and associated proteins [BR:
ogl03036
]
127774672
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127774672
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
127774672
Ubiquitin system [BR:
ogl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
127774672
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
127774672
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
127774672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
PTCB-BRCT
zf-HC5HC2H_2
zf-ANAPC11
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
127774672
NCBI-ProteinID:
XP_052156913
UniProt:
I1PWR9
LinkDB
All DBs
Position
5:complement(21017947..21023267)
Genome browser
AA seq
503 aa
AA seq
DB search
MPGKHGNDGMSKDMGRATRLKRLQTPINLFEDECVFCHSFRTPPQFHGPMAHYQKGKLVS
SDNGSPCPTDIIYVHKKCLEWAPQVFYEGDTIVNLELEIKRAAKLKCKRCKLPGAALGCY
YTKCNRSYHVPCAMMTLNCRWDVDNGCVMCPEHATMPLPCDKISSPRNESGNSSSFPQSQ
SSIEQSDSADCEWEYPIIDQWNTSSSLSQGQSSAKEGISAVPKREIDQLNTSCSSFPEGQ
YLDKEGISTDEYRKEKQTDHLYTERDCPSDLWVLLGSALSESEKDSLQEFASWTDATVVN
EWTENVTHVIVGKSAGSAWSRSYEVLMALLFGKWVVTVGWIMDCLVKFIPSPEASFELRF
SHDSRASIGGNKKRRNQASQGAQKLFSGLNFCLSVYINPDDRQHIQSLIAAAGGQILETN
GGSHSLRENLEKVAVKPCYFVYDGGAPRDFTQGLLDDLPKEMEEGREYAACGAQVISHLR
VFDAVAAYDAQILSHKDHFTLDV
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgcctggaaaacatggcaacgatggcatgtcaaaagacatgggacgtgctactagattg
aagagactgcaaacgccaatcaacttatttgaagatgaatgcgttttctgccattcattt
agaacacctcctcagtttcatggtccaatggcgcattatcaaaagggaaagcttgtgtcc
agtgacaatggcagtccatgcccaacagatatcatttatgttcataagaaatgcctggag
tgggccccgcaagtattttacgaaggtgataccattgtgaacttggagttggaaataaaa
cgtgccgcgaaattgaagtgcaaaagatgcaagcttcctggagcagctcttgggtgttat
tatacaaagtgcaataggagctatcatgttccatgtgcaatgatgactttgaattgccgc
tgggatgttgataacggttgtgttatgtgccctgaacatgcaacgatgccactaccatgt
gataagataagctcgccaagaaatgagagtggcaattcttcttccttccctcagagccaa
tcgtcaattgaacaaagcgattccgctgattgcgaatgggaatatcctataatagatcaa
tggaacacatcaagttctttgtctcaaggacaaagttcagccaaagaaggaatttctgct
gttcctaaaagggaaatagatcaacttaacacttcatgttcttcctttcctgagggccaa
tacttggacaaagaaggaatttccactgacgaatacaggaaagaaaagcaaacagatcac
ctttacacagaaagagattgcccctcggatctgtgggttttgcttggttcagctttaagt
gaatccgagaaggattccttgcaagagtttgcgtcttggacagatgcaactgtggtcaac
gagtggactgaaaatgtgacccatgttatcgttggaaaaagtgctggtagtgcatggagc
cgatcttatgaggtcctgatggctctactgtttgggaaatgggttgtcacggttggatgg
attatggattgcttggtaaagtttattccaagtccagaagcttcctttgagttaagattt
agccatgactcacgtgcatcaattggtggaaacaagaaaagaagaaatcaagcttctcaa
ggggcacagaagttgttctcgggactgaacttttgcctcagtgtctacataaaccctgac
gacagacaacacatacagagcctgattgcagctgctggagggcagatactggagacaaac
ggcggctcgcattcgctgcgcgaaaacctggagaaagttgctgtgaagccatgctacttc
gtctacgacgggggcgctccaagggatttcacccaaggattgcttgatgatctccctaag
gagatggaagagggcagagagtatgctgcctgtggagctcaggtgatcagccatttgagg
gtgtttgatgccgttgcggcttatgatgcacagattctcagccacaaggatcacttcacc
ctggatgtgtaa
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