Oryza glaberrima (African rice): 127775153
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Entry
127775153 CDS
T08853
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03013
Nucleocytoplasmic transport
ogl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127775153
03015 mRNA surveillance pathway
127775153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127775153
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127775153
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
RRM_PARP14_3
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
127775153
NCBI-ProteinID:
XP_052157434
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All DBs
Position
5:263890..267399
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AA seq
383 aa
AA seq
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MATKPRRRSPSLSSSSSTSYSRSPASPSSFSSSPSLSRSPPRPARGARSPSPPPPPPPPR
KASPPPESTVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNR
ADAEKALLYLDGGQIDGNVVKVRFALPPQQQKAAASPKALHSSPKRDVVDHNKVGPSAEK
ATKQQPRKPASPQRKPAPSPRRRSPPSRRVESPRRRPDSPPIRRRTAPSPIRRGGTPSKR
PGSAIRRRSPSPPPRRLRSPRRLSPRRDRGSPIRRRSPLPRRRLTPPRRMWSPPRRPQSL
RHRSRSPIHRPIRSPSRSISPRRGRGPPVRRGRSSSSYSDSPTPPRRGPRRVLRSRSPRR
PLRGRSASSYSRSSSSSGSPIRN
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaagccccgccgccgctccccgtcgctctcctcctcctcctcaacatcctac
tcgcgctcccccgcatcgccctcctccttctcctcctccccgtcgctcagccgctcccct
ccccgccccgcgcggggggcccgctcgccttcaccgccgccgccaccgcctcctcccagg
aaagcgtctccgccccctgagtccaccgtcctccatgttgaccatctctccaggaacgtc
aatgaggatcatctcaaggagatttttgaaaattatggtgaagtcgtcaatgtggagctc
tccatggatagggtggtcaatcttccccgtgggtatggatatgttgagttcaagaataga
gctgatgcagagaaggctcttctttacttggatggtggccaaattgatggaaatgttgtt
aaagtcagattcgcgcttccaccacagcagcaaaaagctgctgcttctccaaaagctctt
cactcttcaccaaaaagggatgtggttgatcataataaagttggtcctagtgctgaaaag
gccaccaaacagcagcccaggaaaccagcatctcctcaaagaaagccagctccatctcca
agaaggcgatctcctccaagtcgaagagttgaatcacctaggcgtaggcctgattctcct
ccaattcgccgtcgaacagctccctctccaatcaggcgtggtggaactcctagcaagaga
ccaggatccgcaatcagaaggcgctcaccctctccgccccctcgaagactaagatcacca
aggcgcctatcaccaagaagagatcggggcagtccaatccgcaggcgctccccattgcct
cgtagaaggctgactcctccaaggaggatgtggagtcctcccagaagaccacagtcactt
cgccatcgcagtagatctcccattcaccgaccaattcgctccccttccagatcgatttct
ccacgcaggggtcggggtcctcctgtgcgccgtggacggtcatcctcatcgtattctgat
tcacctactcctccaagaaggggaccaagaagggtgctcagaagtcgcagtcctagaagg
cctttaagaggaagaagtgcctctagctacagccgtagtagcagcagctcaggttcccct
atccgcaattaa
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