Oryza glaberrima (African rice): 127775186
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Entry
127775186 CDS
T08853
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
ogl
Oryza glaberrima (African rice)
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127775186
Transcription machinery [BR:
ogl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
127775186
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Motif
Other DBs
NCBI-GeneID:
127775186
NCBI-ProteinID:
XP_052157466
UniProt:
I1PYG3
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Position
5:25862488..25865300
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AA seq
558 aa
AA seq
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MGLQMMRGRPCAPCCSSSSSSSSSSSSSSWMPSKHPHAPLSRRKISSESLRALALHLLLK
RRKYQNGDISRISASSSGVLEITENKSNNKADAERKILDDALDRKPQIDWVEEDISSWMD
KSYTSSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQ
TYESEFSLPGDIIKLDPEIPLEEQNDVVIVRSGKSQERKLKRMKASEKGSRVSVKTPSRK
SKKSSSSQFIAEWKNYPGRRRSIVREQSALLVTIKECANLEKIRENLLKDGSEVSHASWA
KAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNG
AEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLPARMEGIIRKVREARRAIRYNTG
RNPPDAEIAALIGVSVANVRLARKCSRRVVSLYTEIGVGQNAKFVEVTPDTSLEAPDEAM
FRMQLRERLLHVLDRLPPREGHVLKLRHGLEDGKCRSLEQIGSIYHVSKEWIRKIEKSAM
SKLRNDDVHNELKDFCGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgcagatgatgcgtggtaggccctgcgccccgtgctgttcgtcgtcgtcgtcc
tcctcctcctcctcttcctcctcgtcctggatgccctccaagcatcctcacgcgccattg
agtcgaaggaaaatctcatctgagtcacttagagcattggccttgcacctcttgctcaaa
cgtcggaaataccaaaatggggatatctcaaggatttcagcatcttcgtccggtgtgctt
gaaatcaccgagaacaagtccaataacaaggctgatgcagaaagaaagatccttgatgat
gctcttgacagaaagccgcagattgactgggttgaagaagatatctcttcttggatggat
aagagttacacaagcagcaatttggagtataacttattaatgcaaaacattcaggtctta
gaaagtagtttggctggtaaagacttggtaaggctggaaagagatatccttgtacatatc
gaacggctgggagctttgaaatcattcaacgcgtctatctccagggccactctaacacaa
acatatgaatcagagttttcacttcctggggatattattaagcttgatccagagattcct
ctcgaggagcaaaatgatgtggtaattgttcgaagtgggaaaagtcaagagaggaaactg
aaaagaatgaaagcatcagaaaagggctctcgggtctccgtgaaaacaccctcacgaaaa
tcaaagaagtccagtagtagtcaatttatagctgagtggaaaaactatccaggccgaaga
aggagcattgtacgagaacaatcagcattgctggttactatcaaggagtgtgcaaacctt
gagaaaataagagaaaacttgttgaaggatgggagtgaagtcagccatgcaagctgggcc
aaggcagctggaattgatgaagcattgttgaggagtaggctgcaagaaggttactgctgc
cgagagagattactggtaaccaccgagtggctagtcaagtacattgcaaagacatacgct
ggaatgggaacagcttttgaggatctactgcaggctgggaaaatgggtgtccttaatggt
gctgagaaattcgacagccaaaaaggatgcaagttctcaacttatgtgaagtactggata
aggaaagcaatgttagcacttcttgctgaaaactctggagtaatccaactgcccgcaagg
atggagggtataattcgtaaggtcagggaagcgagaagggcgattcgctacaacacaggg
aggaacccaccagatgcagaaatcgcagccctcatcggtgtatcagttgccaatgttagg
ttggcacggaaatgctctcgtcgagttgtgtcgctttacacagagatcggagttggacag
aatgcaaaatttgtggaagtgactccggacacatctttagaagctccagatgaggctatg
ttccggatgcagttgagagagagactgcttcatgtcctggacaggctccccccaagagaa
gggcacgtactgaagctgcggcacgggctggaagatgggaaatgcaggtccctggagcag
attgggagcatttaccatgtctccaaggagtggataaggaaaatagagaagtcggccatg
tccaagctgaggaacgacgacgtgcataatgaactcaaggacttctgtggattctag
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