Oryza glaberrima (African rice): 127775471
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Entry
127775471 CDS
T08853
Name
(RefSeq) pre-mRNA splicing factor SR-like 1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127775471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogl03041
]
127775471
Spliceosome [BR:
ogl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127775471
Complex C
U4/U6.U5 tri-SnRNP related factors
127775471
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
ThrE
Motif
Other DBs
NCBI-GeneID:
127775471
NCBI-ProteinID:
XP_052157677
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Position
6:complement(2382638..2386669)
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AA seq
398 aa
AA seq
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MEIQSSGRPIDVLMEKVLSVNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSSAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYVAEPKTLWSWYEPYIK
DDEEFSPGSNGKMTTMGVYVRDLLLGQYYFDSLLPRVPLPILRQVTGHLEKMKLPTKQSG
ITGDSSRLGSDDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRKTLPSARDRERSSDG
ERARSSPRRRRSRSRERDHDSERDRSDRDRGRHKDREHDRHACEDRDRDYRRSSYSSRNV
DRQGRERRDRDSDRHGRSSARRSRSRSRSRSRSPNRGRTKGENHRSSPFGRPPEPSNLAK
LKDLYGDATNTKDDTGDDKAHRDSGTEEVIRLGGARWR
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggagatacagtcatcagggaggccaatcgatgtgctcatggagaaggttttgtcagtg
aacatcctctcctcggactacttcaaggagctctacaggctgaagacttaccacgaggtc
attgatgagatctacaatcaggttgaccacgtagagccatggatgaccggcaactgccgc
gggccctccagcgccttctgcctcctctacaagttcttcaccatgaagctcacggttaag
cagatgcacggcctgctgaagcaccctgactcgccttacatcagagctgttggatttctt
tacctgcgatatgttgcggaaccaaagacgttgtggagttggtatgaaccctacattaaa
gatgatgaggagttttctcctggatctaatggtaaaatgactactatgggtgtttatgtg
cgagatcttctacttgggcagtactactttgacagtcttcttccacgagtgcctcttccg
atcttgagacaggtcactggccatcttgagaagatgaagctcccaacaaagcagtcagga
ataacaggggactctagtcgccttggttcagatgatactgcccgacggcctccttcagta
aaggcttctctgtcggtctcctttggtcagcgtgctccacaccgtgcatccacaagggac
tcatcccctgtccggaagacattgccttcagcaagggatagagaaaggagttctgatggt
gagcgtgcaagatcttcacccaggaggcgacgaagtcggagccgtgaacgtgatcatgat
tctgagcgtgatcgttcagatcgtgaccgtggtaggcacaaggatagggagcatgatcgc
catgcctgtgaggacagagaccgtgattaccgtcgttcaagctattcaagtaggaatgtt
gacagacaaggccgtgaaaggagggacagggattctgatcgacatggacgttcgagtgcc
cgcaggagcaggagcaggagcaggagcaggagcaggagtccaaaccgtggcagaaccaaa
ggtgaaaatcaccgctctagcccatttggtagaccaccagagccatccaacttggcaaaa
ttgaaggatttatatggtgatgcgacaaacacaaaggatgatacaggtgatgataaagct
cacagggattctggaactgaagaggtaatcagattgggaggtgcaaggtggaggtga
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