Oryza glaberrima (African rice): 127775647
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Entry
127775647 CDS
T08853
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 15b
KO
K13098
RNA-binding protein FUS
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127775647
09122 Translation
03015 mRNA surveillance pathway
127775647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogl03041
]
127775647
Spliceosome [BR:
ogl03041
]
Complex A
Other components
Complex A specific factors
127775647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
127775647
NCBI-ProteinID:
XP_052157890
LinkDB
All DBs
Position
1:2852742..2857100
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AA seq
534 aa
AA seq
DB search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NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggtcgtacggatccgacgactaccgcggcggcgggggcggaggcggcggctac
ggcggccgaggtcgcgtcgggatcctgcgggtcgtgtgcgtgcttgcttctggatctgct
cctgactggtttgttngttttgtaggtggcggcggaggcggccgtgggaggggaggtggc
ggaggaggagggggaggatatggtggtggtggtgggggaggtggatatggtggtggcggc
ggaggatacggcggaggtggcggagggtacggcggcggtggtagaggtggcggtggagga
ggctacggcggcggtggcggcggcgggagaggtgggggtgggggtggcggtggccgaggt
ggcggcgggaggggtggaggacgtgacggtgactgggtttgcccagacccgagttgtggc
aacgtgaattttgcaaggaggactgaatgcaacaagtgtggagcaccttctcctgctgga
ggtggaggtggagggtataataaatccggtggagggggtggaggctacaatcgtggtggt
ggcgattttagttctggaggtggcggtggctacaacagaggtggtggagattacaactct
ggtggccgtggtggtggcactggagggggaggaagaggaggaggttacaatagaggtggt
ggcgatgatcgtggatttgatgaccaccgtggtggcaggggtggttatgggggaagagac
caaggaaacaaccaaaggggagacgaaagtggttatgacgctggtagctatgggcaagtt
cctcctcaaggtcctccttcctatggtgggcctggtggtgactatgcagcacctccaagc
tcctatggaggcaataatgcatacaattcagattctgcagtgccacctcctagtagctat
ggtggtggtccaggttcatatccaccaagttatggtgcaccacctccgaacccgccatat
agcggtggtgctccaggtggccaaggtagcctacctcctacatatgatggtgggtatggt
ggtcggcctatgcctgggggtggaggccctggtgcaccgccaccctatcatggtggtggt
ggtggtggtggcggcggcggtggcggtggatacactggcagtgctgctccggagccagct
gcgaaggttaagcagtgtgatgcaaactgtgatgagacttgtgataatgcaagaatttac
atctccaacttacctcctgatgtgactgttgaggaactgcaagaactatttggaggaatc
ggccaggttggaaggatcaagcagaaacgtggctacaaagaccagtggccctggaacata
aagatctatactgatgactctggaaagaataaaggagatgcctgccttgcctatgaagat
ccttctgctgctcattcagctggtggattctataacaattatgaaatgagaggctataaa
attagtgtggcgatggctgagaaatcagctcctagagctcctgcatatggtcatggaggt
ggacgtggtggctatggtggaggtcgcagggataacttcagagatggaggaggccatggg
cctaacaggcatcaaggtggtggttcgcgttcaaggccatactga
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