Oryza glaberrima (African rice): 127776303
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Entry
127776303 CDS
T08853
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127776303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127776303
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127776303
mRNA degradation factors
5'-3' decay
Decapping complex
127776303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
DUF445
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_EDC4L
DUF6277
Motif
Other DBs
NCBI-GeneID:
127776303
NCBI-ProteinID:
XP_052158621
UniProt:
I1Q1T6
LinkDB
All DBs
Position
6:10633294..10641955
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AA seq
1332 aa
AA seq
DB search
MASPSGNPNPTPNQPFELNRLFKQHPPASASAAPNPNHHPAPAGIFPGAAAPAPHHSVVV
PPPMTSGGGPYSYPPATPPFHRGPYLPPYPNDPHLAFAGNPNPPAAAAAPNPAGARLMQL
LGNTAPTHLESAVSMPMPSEFSAAAAVAPPAPLPAMPSAPPARMPSSSSSKMPRGRLLGP
GDRAVHDVDSRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVL
NINTALRSLLRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWKIDEGPDEQNKPQITGKI
EIAIQIVGDAETYHPRICWHSHKQEILFVGVANCVLKIDTTKVGRGMDFSREEPLKCPLD
KLVDGVHLVGKHDADITDLSLSQWMTTRLASASKDGMVKIWDDRKSVPLSVLKPHDGQAV
YSVSFLTAPEHPQHINLITAGPLNREVKIWASTNDEGWLLPSDSETWRCTQTLELVSSLE
HRFEEAFFNQVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPILS
LTGTHESQLDTEQIVQVYCVQTMAIQQYGLELSLCLPPTADNPGFGRDPAISHVYERPPA
EVTVVESSKETSLIDSSVVGPTKPASNNQALEANVPSQVQSTTPPSSIDLGYLEEGALRR
GPSRGPSLGDRDIDPSSLDYSSKKRMNSDGASGQGSFGRKDSFGKEEPRGSQGDGTKTSD
PCPMFKVGGNATHLITPSEIISGVLSSPETIAIGSSQNVEVDAKHVAGRKSEQSVELEAV
KETQIVHEKRERPPKTAEQTVNTISERLVTTDKYSVEDSQSRSADGSVSTLLKHPSGAGD
ENTVSEAPEKTSDGYASRNLQLTLATKEEKVLHPQVSGQLSPSTSTYNSADSSHEPPSNV
NPPIDNVPQVGIQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIETSLGRNMEKSIKAN
IDAMWARFQEENAKHEKAERERMQHITTLITTAVNKDIPVMLEKSLKKEISSVGPAVART
TAPIIEKSLSSAVSDSLQKVLGDKVVNQLDKSLSTKLEATVARQIQTQFHTSAKQALQDA
LRSSFESTIIPAFEQSCKTMFEQVDGAFQKGMSEHGAAIRQQVATAHTPLAQTLRETIAS
ASSINQGLASELLDGQRKLLALVSSGGSLSHNTSVLQPSNGPVASLPEVDAPLDPVKELS
RLISERKFDEAFTMALQRSDVSIVSWLCSQVDLHELCRMNPIPLNQGVLLALFQQLACDI
VNDTPRKLEWMTAVAVAISPTDPMIAVHVRPIFEQVYGVLNHQRSLPASSSSEATNIRLI
MHVINSVLLTYK
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggcttctccctcggggaaccctaaccccacccccaaccagcccttcgagctcaaccgc
ctcttcaagcagcatccccccgcctccgcctccgccgccccaaaccctaaccaccacccc
gcccccgccggcatcttccctggcgccgccgcccccgccccccaccacagcgtcgtcgtc
ccgccgccgatgacgtccggtggcgggccctactcctacccgccggccaccccgccgttc
caccgggggccttacctccccccctaccccaacgacccccacctcgccttcgccgggaac
cctaacccccccgccgccgccgctgctcccaacccggcgggcgccaggctcatgcagctg
ctcgggaacacggcgcccacgcacctcgagtcggcggtgtccatgccgatgccgtcggag
ttctccgccgccgcggctgtggcgccgcccgcgccgctacccgcgatgccgtccgcgccg
cccgcgaggatgccgagcagcagcagcagcaagatgccgagggggaggctcctggggcca
ggggaccgggccgtgcacgacgtggactcgcggctgccaggcgaggcgcagccgcctcag
ctggaggtgacgcccatcaccaagtacacgtcggacccagggctggtgctcggcaggcag
atcgccgtgaaccggacctacatcgtgtatggcctcaagctcggcaacatccgcgtgctc
aacatcaacaccgcgcttcgctcgctcctccgcgggcacacacagagggttacggacatg
gctttctttgcggaagatgtccatcggttagcaagtgcaagtgtagatgggcggatctat
gtatggaagattgacgagggacctgatgagcagaataaaccacaaatcacaggaaagatt
gaaattgccatacagattgtaggagatgctgaaacttaccatccaagaatatgttggcac
tcccataagcaagagattctgtttgttggagttgctaactgcgtcttaaaaatagacaca
acaaaagtaggaagaggaatggacttcagtagagaagaacctcttaaatgcccactcgac
aagctggtcgatggcgttcacttggttggtaaacatgatgcagatattacagatttgtcc
ctatctcaatggatgactactcgtcttgcttccgcatcaaaagatggcatggtaaagatc
tgggatgatcgcaaatctgtgcctctgtctgttctgaaaccacatgatggtcaagctgtt
tactctgtttctttccttacggcacctgagcatccccagcatataaatctcatcacagca
ggccctctcaatcgagaagtaaaaatttgggcttccactaatgatgaaggttggttgttg
ccaagtgactctgagacatggagatgcactcaaacactggagcttgtgagttctctggaa
cataggtttgaggaagcatttttcaaccaagtagcagtgttgccacaagctagccttatt
ttgcttgcaaatgccaaaaagaatgctatttatgctgtgcatgttgaatatggcccagat
cctgcttctactagattggactatatagcggattttacagttgcaatgcctattctaagt
ctgacaggaacacacgaaagccaactggatactgaacagatagttcaagtgtattgtgtc
cagacaatggctatccagcagtatggattggaattatctctttgtttgcctcctacagct
gataatcctgggtttggtagagatccagctatttctcatgtgtatgagagacctccagca
gaagtaactgtggtggagtcatccaaggaaactagtctgattgattcctctgttgttggt
ccaactaaaccagcaagcaataatcaggccctagaagcgaatgtcccttcgcaagttcaa
tccacaactcctccatcaagcattgaccttggatatttagaagaaggtgccttgagaaga
ggtccttcaagaggtccatctcttggtgatcgtgatatagacccgtcatctcttgattat
tcaagtaagaaaaggatgaattctgatggtgcaagtgggcaaggttcatttggtaggaag
gatagtttcggtaaggaagagccaagaggcagccagggtgatggtacaaaaacctcagat
ccttgtcctatgtttaaggtgggaggaaatgctacgcacttgataactccatctgaaatt
atttcaggtgtcctttcgtctccagaaacaattgctattggcagttctcaaaatgtagaa
gtggatgctaaacatgtggctgggagaaaatcagagcaaagtgttgaacttgaagctgtc
aaggagacacaaattgttcatgagaaaagggagagacctcccaagactgctgaacaaact
gtaaacacaatcagtgaacgcttggtaacaactgacaaatacagtgtggaagattcgcaa
tctcggagtgctgatggatcagtatctacacttttgaaacatccttctggtgctggggat
gaaaacactgtaagtgaagctccagagaaaactagtgatggttatgcttctaggaacttg
cagttaaccttggctaccaaggaggagaaagttcttcatcctcaagtttctgggcagtta
tctccttctacaagcacttacaactctgctgattcctctcatgaacctccaagcaacgta
aaccctcctattgataacgttccacaagttggtattcaagaaacactacaacagctaatg
gccatgcatagtgacctgcaaaagcagctgagcacaattgtatctgctcctattgcaaag
gaaggcaaaaggattgagacatctttaggtcgtaacatggaaaagtccattaaggcgaac
attgatgccatgtgggcccgtttccaggaggaaaatgcaaagcatgaaaaggctgaaaga
gagcgtatgcagcatatcactactctcatcacaactgctgtaaacaaggatattcctgtt
atgctggagaagtccctaaagaaagaaatatcttcagttggacctgctgttgcacggaca
acagctcctatcattgagaaatcactatcttctgctgtttctgattcactccagaaagtt
cttggtgacaaggttgtgaatcaactggacaaatccctaagtacaaaacttgaagctaca
gtagctaggcagatccaaacgcagtttcatacgtctgccaagcaggcccttcaggatgct
ttgcgctctagctttgagtcaacaatcattccagcatttgaacaatcttgcaagacaatg
tttgagcaagtagatggtgcattccagaaaggcatgtctgagcatggtgctgctatccgt
cagcaggttgcaacagcacatactccactagcacaaactctcagggaaacaatcgcttca
gcatcatcgataaaccagggtcttgcatcagagttgcttgatggacagcgtaagcttttg
gcacttgtttcatcggggggctccttatcgcataatacaagtgttctgcagcctagtaat
ggaccagtggctagtctcccggaggtcgatgctccactggatcctgttaaggagctaagc
agactgatatctgagcgcaaatttgatgaagcatttacaatggctcttcaaagaagtgat
gtctccatagtgtcttggctgtgctctcaggtcgatctgcacgagttatgcagaatgaac
cccattcctctcaaccaaggggtcctcttggcccttttccagcaactagcatgtgacatc
gtcaatgacacgcccagaaagcttgagtggatgacggctgttgctgttgcaatcagtcca
acagatcctatgatcgctgtgcatgtgaggccgatattcgagcaggtctatggcgttttg
aaccaccaacggtcactgccagcaagcagttcctcggaagcgaccaacatccgtttgatc
atgcacgtaatcaactcggtgctgctgacctacaagtga
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