KEGG   Oryza glaberrima (African rice): 127776518
Entry
127776518         CDS       T08853                                 
Name
(RefSeq) histone deacetylase 1 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03082  ATP-dependent chromatin remodeling
ogl03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    127776518
   03083 Polycomb repressive complex
    127776518
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ogl03036]
    127776518
Enzymes [BR:ogl01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     127776518
Chromosome and associated proteins [BR:ogl03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     127776518
   HDAC complexes
    Sin3A-HDAC complex
     127776518
    BRAF-HDAC complex
     127776518
    REST complex
     127776518
    SHIP complex
     127776518
    MiDAC complex
     127776518
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     127776518
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    127776518
  Chromatin remodeling factors
   NuRD complex
    127776518
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 127776518
NCBI-ProteinID: XP_052158881
LinkDB
Position
6:complement(21860742..21866731)
AA seq 518 aa
MDASAGGGGNSLPTAGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGL
LDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLY
SFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQ
RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPL
DDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFM
RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAPS
NMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPEAELPEQDEDQEDPDERHHADS
DVEMDDVKPLDDSGRRSSIQNVRVKRESAETDAADQDGNRVTAEHTKGTEPAADGVGSSK
QTVPTDASAMAIDEPGSLKVEPDNSNKLQDQASVHQKP
NT seq 1557 nt   +upstreamnt  +downstreamnt
atggacgcctccgccggaggcggggggaactcgctgccgacggcgggggccgacggggcc
aagcggcgtgtgtgctacttctacgacgcggaggtggggaactactactacgggcagggg
cacccgatgaagccccaccgcatccggatgacccacgcgctgctcgcccactacggcctc
ctcgaccagatgcaggtgctcaagccccacccggcgcgcgaccgcgacctctgccgcttc
cacgccgacgactacgtcgccttcctccgctccgtcacgccggagacccagcaggaccag
atccgggcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctac
agcttctgccagacctacgccgggggatccgtcggcggcgccgtcaagctcaaccacggc
cacgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctcg
ggattctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccag
cgtgttctctatgtggatatcgatattcaccatggggatggtgtggaggaggcgttctac
acgacggacagggtgatgacggtctcgttccacaagtttggggattatttcccggggacc
ggggacattcgcgatattgggcactcaaaggggaagtattactctctgaatgtgccgttg
gacgacggtattgacgacgagagctaccagtcgttgttcaagccgatcatggggaaggtg
atggaggtttttcgccctggcgcggtggtgctccagtgcggtgcggactctctgtcgggt
gataggttgggttgcttcaacctgtcgatcaggggccacgcggaatgtgtgagattcatg
aggtccttcaacgtcccgctgttgctgcttggtggtggtgggtataccataagaaatgtt
gcacggtgttggtgctatgagacaggagttgcacttggtcatgagctcactgacaagatg
cctccaaatgagtattttgagtactttggtccagattatacacttcatgttgcaccaagt
aacatggagaacaaaaacacacgccagcaattggatgatataagatcaagacttcttgat
aatctttcaaaacttcgacatgctcctagcgtccaatttcaagagcgaccccctgaggct
gagctacctgagcaagatgaagaccaagaggatcctgatgaaaggcaccatgctgattct
gatgtggaaatggatgatgtcaaacctttggatgactcaggaaggaggagcagtattcag
aatgtgagagttaagagagagtctgctgaaacagatgccgcagatcaggatggtaatagg
gtcactgcagagcacaccaagggcacagaacctgcggctgatggagttggttcctcgaaa
caaactgttcctaccgatgcaagtgcgatggccatagacgaaccaggctccctgaaagtc
gagccagataactcaaacaaattgcaagatcaagcatcggtgcaccagaagccataa

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