Oryza glaberrima (African rice): 127776540
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Entry
127776540 CDS
T08853
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127776540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogl03041
]
127776540
Spliceosome [BR:
ogl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127776540
Complex C
U5 SnRNP specific factors
127776540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
127776540
NCBI-ProteinID:
XP_052158912
LinkDB
All DBs
Position
6:complement(3394171..3404065)
Genome browser
AA seq
2363 aa
AA seq
DB search
MWSGGPPPPPPPPMGAAPPPPGTGAPPPPPPAAVGPPGGVGGGKPLTAAELEAQLVEKAR
KWHQLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFV
PHAVYKLLENMPMPWEQVRHVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREK
RDRRHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLELDEEEDSAVHEWFYDHKPLVK
TKLINGPSYRKWHLSLPIMATLYRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGG
PKFEPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVRLGVYHTPM
IMYIKTEDPDLPAFYYDPLINPITSTNKVDRRERRTTEEDEDEDFCLPDGVEPLLKGTEL
YTDTTAAGISLLFAPKPFNMRSGRTRRAEDIPLVSEWYKEHCPPAYPVKVRVSYQKLLKC
YVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNL
NYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQ
LADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPM
WRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDV
LDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNV
AHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTT
VHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDN
PHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKR
HLFPNWVKPADSEPPPLLVYKWCQGINNLQDVWDTSDGQCVVMLQTKFEKFFEKIDLTLL
NRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLL
GLTRASEIAGPPTMPNEFLTYADTKVETRHPIRLYSRYIDKVHIMFRFTHEEARDLIQRY
LTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENS
FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRV
DDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCE
NKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTH
FRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSW
DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT
DVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR
RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMD
LCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWQMSKPSLVSESKDVF
DQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLH
SAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF
SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR
LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP
FQACLKIEKFGDLILKATEPQMVLYNIYDDWLKSISSFTAFSRIVLILRALHVNNEKAKM
LLKPDKTIVTEPHHIWPTLTDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEIRDIIL
GAEIAPPSQQRQQIAEIEKQSRETTQLTAVTTRTTNVHGDELIITTTSPYEQQAFASKTD
WRVRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQIAGFLYGLS
PQDNPQVKEIRCIAIPPQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQD
LTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDTGSNPHGYL
PTHYEKVQMLLSDRFLGFYMVPDNTPWNFNFMGVKHDPLMKYNMKLGTPRDFYHEDHRPT
HFLEFSNIDEGEVAEGDREDTFT
NT seq
7092 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcggcgggccgccgccgcctccgcctccgccgatgggggccgcgccgccgcca
ccgggcacgggcgctccgcctccgccgccgccggcggctgtgggcccgcccggtggcgtt
ggcggcggcaagccgctgacggcggcggagctcgaggcgcagctggtggagaaggcgagg
aagtggcaccagctgaactccaagcggtacggcgacaagcgcaagttcggcttcgttgag
gcgcagaaggaggacatgccacccgagcacgtccgcaaaatcatcagggaccatggtgac
atgtcttcaaagaagtacaggcatgataagcgtgtatatcttggagcactcaaatttgtg
cctcatgctgtttacaagctattggaaaatatgccaatgccctgggaacaggttcggcat
gtaaagatcctttaccatatcactggtgcaataacctttgtaaatgagatcccatgggta
gttgagcccatttaccttgcacagtggggcacgatgtggatcatgatgaggagggagaag
agagataggcgacatttcaagagaatgcgctttcctccatttgatgatgaggaacctcca
ttagactatgctgataatttgctggatgttgaaccactggaggctatacagttggagttg
gacgaggaggaagattcagctgtgcatgaatggttttatgatcataagccgcttgtgaag
actaagcttataaatggccccagctaccggaaatggcatctatcgcttcccataatggcg
acactctatcgtcttgctggccaacttttgtcggatttgattgatcgaaattatttctat
ttgtttgatatggagtctttctttaccgccaaagcactcaacatgtgtatcccaggaggt
ccgaagtttgagccattgtaccgtgatatggagaagggggatgaggactggaatgagttt
aatgacatcaacaaactcatcatccgccaaccacttaggactgagtacagaattgctttt
ccacacttgtacaataacaggccaaggaaagtgaggcttggggtatatcatactccaatg
ataatgtatatcaaaacagaggatccagacttgcctgcattttactatgatcctttgata
aatcctataacttcgactaacaaggttgatcgtcgggagaggagaacaactgaagaggat
gaagatgaggacttctgtctcccggatggtgtggagcccctcttgaaaggaacagaactt
tacactgatacaacagcagctggcatttcattactctttgctccaaagccttttaatatg
agatctggtagaacacgtcgtgctgaagatatccctcttgtatctgaatggtacaaggag
cactgcccaccagcttatccagtgaaggtgcgtgtcagctatcagaagctactgaagtgt
tatgtgctcaatgaactacatcataggcctcccaaggcacagaagaagaagcacctgttc
cgttcactccaagctacaaagttttttcaaacaacagagcttgactgggcagaagcaggt
ttgcaagtttgcaaacagggttacaatatgttgaacttgttgatccacagaaagaacctt
aactaccttcacttggactacaacttcaatttgaaacctgtgaagacactcacaacgaag
gaaaggaaaaaatctcggtttggaaatgcatttcatttatgccgtgagatattacgactt
actaagttagttgttgatgcaaacatccagttccgcttgggaaatgttgacgctttccag
ttagcagatggcttgcaatacatattctctcatgttggccagctgactggtatgtaccgc
tacaagtatcgtctgatgcggcaaatcaggatgtgcaaagatctgaagcacttgatatac
tacaggttcaacactggtcctgtaggaaaaggacctggctgtggattttgggctccaatg
tggagggtgtggctgtttttcctgcggggtattgtgccactgcttgaaagatggttaggt
aatttactggccaggcagtttgaaggtcgtcattcaaaaggagttgctaaaactgtaacc
aaacaacgtgttgagtctcacttcgatcttgaacttcgagctgctgttatgcatgatgtc
cttgatgctatgcctgagggtatcaagcaaaacaaggcacggactatactgcagcatctt
agtgaggcatggcggtgctggaaggcaaatatcccatggaaggtcccgggcctacctgtt
cctattgagaacatgatacttcgttatgtaaagtccaaggctgattggtggaccaatgtt
gctcactacaatcgtgagcgtatcaggcgtggtgctacggttgacaagactgtgtgccgt
aagaatcttggaagattaactcgtttgtggctgaaggcagaacaggagaggcagcacaac
tatttgaaagatgggccatatgttacacctgaagaggcagttgctatttacacaacaaca
gttcattggcttgaatcaaggaagttctcgcctattccttttcctccactttcttacaag
catgacaccaaacttcttatactagctctggaaaggctaaaggagtcttacagcgtggct
gtaaggttaaatcaactgcagcgggaggaacttggcttgattgagcaagcatatgataat
cctcatgaggcgctttcaaggataaagaggcatcttcttactcagcgtgcttttaaagaa
gttggcattgagtttatggacctgtacagctacctgatcccagtatatgaaattgagcct
cttgagaaaatcactgatgcctaccttgaccagtacttgtggtatgagggggacaagcga
cacctattcccgaactgggtcaagcctgctgattcagaaccacctcctttgcttgtttac
aaatggtgccaaggtataaataatctacaggatgtatgggacactagtgacgggcagtgt
gttgtgatgctgcagacaaaatttgagaagttcttcgaaaaaattgatctgacactgttg
aacaggcttctgcggttggtcttggaccataatattgctgattatgtcactgcaaagaac
aatgttgtgttgtcttacaaggatatgagtcatactaattcttatggtctcattcggggt
ctacagtttgcatcatttgttgtgcaatactatggtcttgtgctggatctccttctgctc
ggtttaacacgtgcaagtgagatcgctgggccacctacaatgcctaatgagttcctcaca
tatgctgataccaaagttgagacaaggcatcctatccggttgtactctcggtatattgat
aaggtgcatataatgttccgctttactcatgaggaagcacgtgatttaattcagcgttat
ttgacagagcatcctgatcctaataatgagaacatggtcggttacaacaacaagaaatgt
tggcctagagacgcaagaatgaggctcatgaagcatgatgtaaatcttggaagaagtgtt
ttttgggacatgaagaaccgccttccaaggagcatcacaacgttagagtgggagaacagc
tttgtctctgtttacagcaaggacaaccctaatctgctgtttagcatgtgtgggtttgag
gttcgtatactaccaaaaatacggatgactcaagaagcgtttagtaacaccaaagatgga
gtctggaacttgcagaatgaacagacaaaagaaaggacagctattgcctttctaagagtt
gatgatgagcatatgaaagtgtttgagaaccgtgtcaggcaaatccttatgtcctcaggg
tcaactacattcactaagattgttaacaagtggaatactgctcttattggtcttatgaca
tatttccgtgaagcaactgttcatacccaggagctcttggatttacttgtcaaatgtgaa
aacaagattcagactcgcataaagattggactgaactcaaaaatgcctagcaggtttccg
cctgttatcttctatacacccaaggaaattggaggtctgggaatgttatcgatgggtcac
attctgataccacagagtgatctcaggtacagcaaacagacagatgttggtgtgacacat
tttcggagtggtatgagccatgaagaggaccagcttatccctaacttatatcgctacatt
cagccctgggagagtgagtttattgattcacagcgggtttgggctgagtatgctttgaag
aggcaggaagcacaatcacagaacagacggttaacacttgaggatcttgaagattcatgg
gatagaggtattcctcgtatcaacactcttttccaaaaagaccgtcatactttggcatat
gataaaggatggagagtgagaacagactttaagcagtaccaagtgctcaaacaaaaccca
ttctggtggacacatcagagacatgatggaaaactatggaacctaaacaactataggact
gatgtcatccaagctcttggtggtgttgagggtattttggaacacaccttgtttaaagga
acgtatttccctacttgggagggtctgttttgggagaaagcgtcaggttttgaggagtcc
atgaaatacaagaagctgacgaatgcacaacgttctggtctcaatcagatacccaaccga
agatttaccctgtggtggtcaccaaccatcaatcgtgcaaatgtgtatgttggtttccag
gttcagctagatcttacgggcattttcatgcatgggaaaattccgaccctgaagatttct
ttaatccagatcttccgtgcgcatctgtggcagaagatccatgaaagtgttgttatggat
ctttgccaagttttggatcaagagctggatgcactggagattgagacagtgcagaaagag
acaatacatccgaggaagagttacaagatgaacagctcctgtgcagatatcctccttttt
gctgcacataggtggcagatgtctaaaccgagcttagtctctgagtcaaaggatgtcttt
gatcagaaagctagcaacaagtattggattgatgtgcaactccgatggggagactatgat
tcacatgacattgagcgttatacaagggccaagttcatggactacactactgacaatatg
tcgatatatccatctccaacaggggtgatgattggaattgatctagcatataatttgcac
tctgcttttggcaattggttccctgggtcaaagccccttcttcagcaagcaatgaacaag
ataatgaagtcaaatcctgctctgtacgtgctgagggagagaataaggaagggtctacag
ctgtattcttcagaacccactgagccgtatttgtcttcacagaactatggagagatattc
agcaatcagatcatatggtttgtggatgacacaaatgtctatcgagttaccattcacaaa
acatttgagggtaacttgaccactaaaccaatcaatggtgctatttttattttcaatcca
agaactggtcaactatttctgaaggtcatccacacaagtgtatgggctggacaaaagcgt
cttggacaactggccaagtggaaaacagctgaagaggttgctgcattagttcggtcgctt
cctgtagaagagcagccaaagcaaatcattgtgacaaggaagggtatgttggatcctttg
gaggtccatctgcttgacttccctaacattgtgatcaagggcagtgagctgcagctgcca
ttccaagcttgtttgaagattgagaagttcggtgatcttattctcaaggccacagaaccc
cagatggttctttacaacatatatgatgattggttgaaaagtatctcatcattcactgct
ttctctcggattgtgcttatattgcgtgcacttcatgtcaataatgagaaggcaaagatg
ctgctcaagcctgacaaaactattgttacggaaccacatcatatttggccaaccttgact
gatgagcaatggctgaaggttgaatgtgcactcagggacctcatcctgtctgattatgca
aagaaaaacaatgttaatacgtctgcgctgacacaatctgaaattcgtgacattatactt
ggtgctgaaatagctccaccatcacagcagaggcaacagattgctgaaattgagaaacag
tctagagagacgactcagctgaccgcagttactacaaggacgaccaatgtgcatggagat
gagctcatcatcacaacgaccagtccatacgagcaacaagcatttgcatcaaagactgat
tggcgtgttagggctatctctgccacaaacttgtatcttcgtgtcaatcacatttatgtt
aactcagatgatataaaggagactggctacacttacattatgccaaagaatatattaaag
aagttcatatgcatagcagatttaaggacacagattgcagggtttctgtatgggctgagc
ccacaggataatccccaagttaaagagatcagatgcatagctattcctccgcagcacgga
actcatcagatggtgacactgcctgcaaaccttcccgagcacgagttccttaatgatttg
gagccactgggatggatgcatacccaaccaaatgaagctcctcagctatcaccacaggat
ttgacatcacatgccaagatcttggagaacaacaagcaatgggacggtgagaagtgcatc
attttgacatgcagctttaccccaggatcttgttcattgaccgcgtacaagctgacgcca
agcggttacgagtggggccgtagcaacaaggacaccggaagcaacccacatggatatctc
ccgactcactacgagaaggtccagatgcttctcagcgacagattcctgggattctacatg
gtgccggataacaccccttggaacttcaacttcatgggagtcaagcacgacccgctgatg
aagtacaacatgaagcttggcacgccccgggacttctatcacgaggaccatcggccgacg
catttcctcgagttcagcaacatcgacgagggcgaggtcgcagaaggtgatagggaggac
accttcacgtaa
DBGET
integrated database retrieval system
