Oryza glaberrima (African rice): 127776653
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Entry
127776653 CDS
T08853
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127776653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127776653
03110 Chaperones and folding catalysts [BR:
ogl03110
]
127776653
03029 Mitochondrial biogenesis [BR:
ogl03029
]
127776653
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogl04147
]
127776653
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
127776653
Messenger RNA biogenesis [BR:
ogl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
127776653
Chaperones and folding catalysts [BR:
ogl03110
]
Heat shock proteins
HSP60 / Chaperonin
127776653
Mitochondrial biogenesis [BR:
ogl03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
127776653
Exosome [BR:
ogl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
127776653
Exosomal proteins of other body fluids (saliva and urine)
127776653
Exosomal proteins of breast cancer cells
127776653
Exosomal proteins of colorectal cancer cells
127776653
Exosomal proteins of bladder cancer cells
127776653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
127776653
NCBI-ProteinID:
XP_052159106
UniProt:
I1PYX1
LinkDB
All DBs
Position
6:complement(904240..909730)
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AA seq
601 aa
AA seq
DB search
MASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVSVASRPRNARLQRKCNFRVKAAKEL
YFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAREVELED
PVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTA
KALVEELKKLSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSEN
NLYVVEGMQFERGYISPYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVLEEAIRGAY
PILIIAEDIEQEALATLVVNKLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRDEV
GLSLDKADKSVLGTAAKVVLNKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKL
NERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAR
VDAIKDNLENDEQKVGAEIVRRALSYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAAT
GQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPEPAPVTNPMDNSGYG
Y
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacattcggtgccacttctacggttggcctcatggctgcgccaaccggaatt
gtatcagacaagaagccatcttctctatcttcggtgtcatctgtttctgttgccagccga
ccacgcaatgcacgccttcagaggaagtgcaacttcagggtaaaagctgccaaggagttg
tacttcaacaaggatggctcggctatcaagaagcttcagactggagtaaacaagcttgct
gaccttgttggagttacactgggaccaaagggaaggaatgttgttttggagagcaagtat
gggtcccctaagattgtcaatgatggtgttacagttgcaagagaggttgaactggaggat
cctgttgaaaatattggagctaagttggttaggcaagcagcagcaaagaccaatgattta
gctggagatggcacaactacttctgttgtgcttgctcaggggctgattgctgagggtgtt
aaggtcgttgcagctggtgccaatcctgtgcaaattacacgtggtatcgagaaaactgcg
aaagcactagttgaagagctaaagaaattgtcaaaggaggttgaagacagtgagcttgcg
gatgttgctgcagtcagtgctggcaacaattatgaaatcggtaatatgatagcagaggct
atgagcaaggttggcaggaagggtgtggttacccttgaagaagggagaagttctgagaat
aatctctatgttgtggagggaatgcagtttgaacgtggttatatctccccgtattttgta
actgacagcgagaaaatgtctgcagaatatgagaactgcaagcttcttttggtggacaaa
aaaatcaccaacgcaagggatcttatcaatgttttggaggaggccataagaggtgcatac
ccaattctgataattgctgaggatattgagcaggaggctcttgctactcttgttgtcaac
aagcttagagggtcattgaaaattgccgctatcaaagcccctggttttggtgagcgcaag
acccagtacttggatgatattgccattctaactggagcaactgtaatcagggatgaagtt
gggctgtcacttgacaaggcagacaaatcagttttaggaacggctgcaaaggtggtcctt
aacaaagagtcaacaacaattgttggtgatggcagtacacaggaagaagtgactaagagg
gttgcacaaataaaaaatctcatcgaggctgccgaacaagaatacgagaaggaaaagctc
aatgagaggattgcaaagcttgctggtggtgttgcagtcattcaggtgggagcacaaaca
gagaccgaactaaaagagaagaagttgagagttgaggatgccctaaatgctaccaaggct
gctgttgaggaaggtattgttgttggtggagggtgcactcttctgagactggcagctaga
gttgacgccatcaaggacaacctggagaatgatgagcagaaggttggagctgaaattgta
aggagggcgctgagctacccgcttaaattgattgctaagaatgctggtgttaatggaagc
gttgttaccgagaaggttctctctaacgataacttcaagtttggttacaatgctgcaact
ggacagtacgaggatttgatggctgctggtatcattgaccccactaaggtggtgagatgt
tgtcttgagcatgctgcgtcggtggctaagacattcctcacatcggatgtcgtcgtcgtc
gagatcaaggagcctgagcctgcgcccgtcaccaacccgatggacaactccggctacggg
tactga
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