Oryza glaberrima (African rice): 127777318
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Entry
127777318 CDS
T08853
Name
(RefSeq) transcription factor SPEECHLESS-like isoform X1
KO
K20558
transcription factor SPEECHLESS
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
127777318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogl03000
]
127777318
Transcription factors [BR:
ogl03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
127777318
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Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
GREB1_2nd
Motif
Other DBs
NCBI-GeneID:
127777318
NCBI-ProteinID:
XP_052159853
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Position
6:18909808..18913712
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AA seq
401 aa
AA seq
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MGDALCDQLLLVDSDGGEFIPHHADADADDLFTILETWEDCANVVAGGAPATTTTLGSPI
AAAACISGVVGGQNHQQLPEPAAAKTVPATNNKRREEEVADRDGDGDDDDGSPQKRHKCC
SPESSTTDVAAATTPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVD
YIKELQQVLHSLEAKKQRKVYTDQVLSPRPPATVAASCCSPRPPPLSPRLPPQLLKSTPP
LSPRLAVPISPRTPPTPGSPYRLLRLPPPPPPASGSNYASPAMTPTHHETAAPSLDAIAA
ELSAYASRQALGGGLLLPDVKVEFAGANLVLKTVSQRSPGQAVKIIAALEGRSLEILHAK
ISTVDGTAVNSFTVKYIFGQIGIECELSAEELVQVIQQTFT
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgcgctgtgtgatcagctcctcttggtggacagcgacggcggcgagttcatc
ccccaccacgccgacgccgacgccgacgacctcttcaccatcctcgagacgtgggaggac
tgcgccaacgtcgtcgccggcggcgcccccgcgaccacgacgacgttaggtagtcctatt
gccgccgctgcctgcatctccggcgttgttggtgggcagaatcatcagcagctgccggaa
cctgccgccgcgaagaccgtgccagccaccaataacaagcggcgggaggaggaggtggcg
gaccgtgacggcgacggagacgacgacgacggttcgccgcagaagaggcacaagtgctgc
tcgccggagtcttcgacgacggacgtggcggcggcgacgacgcccaagacggcgcacatc
gccgtggagcgcaaccggaggaagcagatgaacgagaacctcgccgtgcttcgctccctc
atgccatgcttctacgtcaagcggggagaccaggcatccatcataggaggagtggtggac
tacatcaaggagctgcagcaagtgctgcactcgctggaggccaagaagcagcgcaaggtc
tacaccgaccaggtgctcagcccacggccgccggcgacggtggcggcgtcgtgctgcagc
ccgcgcccaccgccgctcagccccaggctgccgccgcagctgctcaagtccacgccgccg
ctcagcccgcggctcgccgtgccgatcagccccaggacgccgccgacgcccggtagcccc
tacaggctcctccggctgccgccgccgccgcccccggcgtccggctccaactacgcgtcc
ccggcgatgacgccgacccaccacgagacggcggcgccgtcgctggacgccatcgccgcc
gagctgtcggcgtacgccagcaggcaggcgctgggcggcggcctcctcctccctgacgtg
aaggtggagttcgccggcgcgaacctggtgctgaagacggtgtcgcagcggtcgccgggg
caggcggtgaagatcatcgccgccctggagggccgatcgctggagattcttcacgccaag
atcagcaccgtcgatggcaccgccgtcaactccttcactgtcaagtatatctttgggcag
attggaattgagtgcgagctcagcgctgaagagttggtacaggtgattcagcaaacgttc
acatga
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