Oryza glaberrima (African rice): 127777493
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Entry
127777493 CDS
T08853
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127777493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127777493
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127777493
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127777493
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127777493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
TFIIA
zf-CCCH_3
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
127777493
NCBI-ProteinID:
XP_052160055
LinkDB
All DBs
Position
6:26722407..26727878
Genome browser
AA seq
670 aa
AA seq
DB search
MDDGDLSFDFEGGLDQAPAGGGGGPAPHSSDPGGVGGGGVGGGGGGGPGDGGGHGRGRGR
GSYRQTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVK
ECNMYKMGFCPNGPNCRYKHVKLPGPPPPVEEVLQKILQIRSFNKFNQHRHNNYNQQGER
PQHPQGSGLPNQNSIDNTTTTTAQPAVGQQAQTTNQQPPQQQQQQQQQQQQQQQKPNTND
QVQSVPNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEA
FESIENVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCE
LSFQKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDGELTAILIAAEAKKE
EEKAKGVSADEAADNQDIVLFDDNEEEEEEESEEEEEGNGQESQGRGRGRGMMWPPQMPM
LRGVGPMMGGRGFPPNMIGDGFGFGGGFGMPDPFGVPRGFPPFGPRFPGDFARGGPMPGM
VFPGRPPQPGGMFPMGLEMMMGPGRGPLMGGLGMGGPGRPNRPVGMAPFMPPPPPPNNRG
TKREQRRPGGERGDRYETTSDQGSRGHDATGNSGAEGARSQSGDRYGRSALRDDDSESDE
EAAPRRSRKR
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacctcagcttcgacttcgagggcggcctcgaccaggcccccgccggc
ggcggcggcggccccgcgccgcactcgtccgaccccgggggcgtcggcggcggcggcgtg
ggcgggggcggcggcggcggccccggggatggcggcgggcacggccgcggccgcggccgc
ggcagctaccggcagacggtgtgccggcactggctccgcggcctgtgcatgaagggggag
gcctgcgggttcctgcaccagttcgacaaggcccggatgcccgtgtgccgcttcttccgc
gacttcggcgagtgccgcgagcccgactgcgcatacaagcactcctacgacgatgtcaag
gagtgcaacatgtacaagatgggcttttgccctaatggtcctaattgccggtacaagcat
gttaagctaccagggccaccacctcctgttgaggaagttctgcagaagattttgcagatt
cgctctttcaataaattcaatcagcataggcacaataactataatcagcaaggggagaga
cctcaacatccacagggttcaggtttacctaaccaaaatagtatagataatactacaacc
acaaccgctcagcctgctgttggacagcaagcacaaactacaaatcaacagccaccacag
cagcagcagcagcagcaacaacaacaacaacaacaacaacagaagccaaatactaatgac
caagtccaatctgttccaaatggctcgtcgaatcaagccactagaattgcaacgcccctt
ccacaagggccatctaggtacttcattgtcaagagttgcaatagggagaatctggagata
tcagttcagcagggcatttgggctacccaaaggagtaatgaggctaaacttaatgaagcc
tttgaatccattgagaatgttattttgatattctcaatcaatagaactcgtaatttccag
ggttgtgcaaagatgacttctaggattggtggctacattggtggtggaaattggaaatct
gctcatggaacggcacattatggtcggaacttctccatacaatggcttaagctctgtgaa
ctgtcatttcagaaaacacatcatctgcgcaatccatacaatgacaatctccccgttaag
atcagccgagattgccaggaattagaacccttcattggtgagcaattggcttcactgctt
tatctagaaccagacggcgagctgacggctatactaattgcagcggaggccaagaaagaa
gaagaaaaggctaaaggagttagtgctgatgaggcagctgacaatcaagatattgtgctg
tttgatgacaatgaagaagaggaggaagaggaaagcgaggaggaagaagaaggcaatggc
caagaatctcaaggaaggggaagaggaagagggatgatgtggccacctcaaatgccaatg
ctgcgtggtgttgggccaatgatgggagggcgtggcttccctcccaacatgatcggcgac
ggttttggttttggtggtggttttggtatgcctgatccttttggtgtgcctcgtggtttt
cctccatttggcccaagattccctggtgacttcgctagaggaggtcctatgcctggtatg
gtcttccccggcaggcccccacaacctgggggcatgtttcctatggggctagaaatgatg
atgggtcctggtcgtggaccgctaatgggaggcttgggaatgggtgggcctggacggcca
aatcgacccgttggtatggctcccttcatgcccccaccacctccaccaaataaccgtggc
acgaagcgggagcaaagaagaccaggtggtgagaggggtgacaggtatgagacaacttca
gatcagggaagcaggggtcatgacgccactgggaattctggagcagaaggagccaggtcg
cagtctggggacagatacggtagaagcgccctccgagacgatgacagtgagagtgacgag
gaagcagcgcccaggaggtcgcggaaacgataa
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