Oryza glaberrima (African rice): 127777680
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Entry
127777680 CDS
T08853
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03013
Nucleocytoplasmic transport
ogl03015
mRNA surveillance pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127777680
09122 Translation
03013 Nucleocytoplasmic transport
127777680
03015 mRNA surveillance pathway
127777680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127777680
03041 Spliceosome [BR:
ogl03041
]
127777680
03009 Ribosome biogenesis [BR:
ogl03009
]
127777680
03012 Translation factors [BR:
ogl03012
]
127777680
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127777680
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127777680
mRNA cycle factors
Stress granule specific factors
127777680
Spliceosome [BR:
ogl03041
]
Complex C
Other components
EJC/TREX
127777680
Ribosome biogenesis [BR:
ogl03009
]
Eukaryotic type
90S particles
Helicases
127777680
Translation factors [BR:
ogl03012
]
Eukaryotic type
Initiation factors
eIF-4
127777680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
AAA
Motif
Other DBs
NCBI-GeneID:
127777680
NCBI-ProteinID:
XP_052160252
LinkDB
All DBs
Position
1:23434727..23438246
Genome browser
AA seq
404 aa
AA seq
DB search
MAAATTSRRGPGAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQR
AVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVML
AIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILD
EADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELT
LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAM
HGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGR
SGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccaccacgtcgcggcgcggcccgggcgccatggacgacgagaacctcacc
ttcgagacctccccgggggtcgaggtcatcagcagcttcgaccagatggggatccgcgac
gacctcctccgcggcatctacgcctacggcttcgagaagccctccgccatccagcagcgc
gccgtcctccccatcatcagcggccgcgacgtcatcgcccaggcccagtccgggaccggc
aagacctccatgatctcgctctccgtctgccagatcgtagacaccgccgtccgtgaggtg
caggctttaatactgtcaccaactagagaacttgctgcacaaacagaaagagttatgctg
gctatcggtgacttcatcaatatccaagtgcatgcttgtattggtggcaaaagtattggt
gaggatattagaaagcttgagcacggagtgcatgtggtgtcaggaacacctggcagagtc
tgtgatatgatcaagagaaggaccttgcgtacaagagccattaagctcctaattctggat
gaagctgatgagatgttgggcagaggctttaaggatcagatatatgatgtgtacagatac
ctccctccagaactccaggtttgcttgatctccgcaactctgcctcacgagatcttggaa
atgaccagcaaattcatgactgatccagttcggatccttgtgaagcgtgatgaattgact
ctagagggcatcaagcaattctttgttgctgttgagaaagaagaatggaagtttgacacg
ctttgtgatctttatgatacactgacaatcacccaagctgtcattttctgcaacacaaag
agaaaggttgattggcttacggaaagaatgcgcagcaataacttcacagtatcagctatg
catggcgacatgcctcaaaaggaaagggatgccattatgggtgaattcaggtctggtgca
acccgtgttctaatcacgacagatgtgtgggctcgaggcctcgatgttcagcaggtctct
cttgtcataaattatgatctcccaaataatcgtgaactttacatccatcgcattggtcgc
tctggacgttttggtcgcaagggtgtggccatcaattttgtcaaaaaggaagacatccgt
atcctgagagatattgagcagtactacagcacgcagattgatgaaatgccaatgaatgtt
gctgatctaatttaa
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