Oryza glaberrima (African rice): 127778307
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Entry
127778307 CDS
T08853
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127778307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogl03041
]
127778307
03009 Ribosome biogenesis [BR:
ogl03009
]
127778307
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127778307
Spliceosome [BR:
ogl03041
]
Complex A
U1 snRNP components
U1 related factors
127778307
Complex B
127778307
Ribosome biogenesis [BR:
ogl03009
]
Eukaryotic type
Pre-60S particles
Helicases
127778307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127778307
NCBI-ProteinID:
XP_052160851
LinkDB
All DBs
Position
1:18688517..18694247
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AA seq
788 aa
AA seq
DB search
MSAGTAPAAPRYAPDDPSLPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPPEDQLPPPP
PLPPPPPRSGRGDRDRDRRDRSRSRTPPRRDHRDRDRRHDDHRSAPSHHHPLPAAAAVAA
DDPSTEAYRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIA
LQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVK
FGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDE
ADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELV
ANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQFGASAI
HGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGR
TGRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMASRGGRGGRKRNRWATR
SDRGGSRSELDSRYGGRDGLSGSSGRLDSSRSSRRHDYGDDGRSRRSGRGRSRSRSRSDS
DRYSRSPKRSRRHSRSRTRSRSRSRSRSYTRNRRASRSRSRSPGASRRHERSATGSGSAL
PDSGHGERKRTPEADPSRNHTNHSDPKDDRHPEDGKVGKVDLDRSPTPQDKSGPYSPAYN
GKTSRSVSPGNQVEGNNKAAEVSKNPDPSSPPHHGKTREDEEEGMIDEDGEIADDPRANA
TVQNGGDN
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcagggaccgccccggccgcgccgcggtacgcgccggacgacccgtcgctcccc
aagccgtggcgcgggctcgtcgatggcaccaccggctacctctactactggaacccggag
accaacatcacccagtacgagaagccgctgccgcccgaggaccagctcccgccgcccccg
ccgctccccccgccgcctccccgctccggccgaggcgaccgagaccgcgaccgccgcgac
cgctcccgatcccgcaccccgccgcggcgcgaccaccgggaccgcgacaggcgccacgac
gaccacaggtcggcgccttcccaccaccatcctcttccggccgccgccgccgtcgccgcc
gatgatccctccaccgaggcgtatcgccaccgccacgagatcaccgttgtcggggacaac
gtgccagctccgataacttcgtttgagactggtggattcccaccggaaatcctcaaggag
atacaacgtgctggattctcaagtccaacgccaatccaagctcagtcatggccaattgcc
ttgcagtgtcaagatgttgtagctattgcaaagacaggatctggaaaaactcttgggtat
ctacttcctggatttatgcatattaaacgcttgcaaaacaacccaaggtctggtccaaca
gtgctagttttggcaccgacaagggagcttgcaactcagattttggaagaagctgtgaaa
tttggcagatcatcaagaatttcttccacgtgtctatatggtggtgctccaaaaggcccc
cagctaagagatttggatagaggggtcgatgtcgttgttgctacaccaggaaggttgaat
gacatcctagaaatgcgaaggataagccttaagcaagtgtcgtaccttgttctagatgaa
gctgaccgtatgttggacatgggatttgaaccacaaattcggaagatagtgaaagaaatt
cctcctcgtcggcaaaccctcatgtacactgctacttggcctaaggaagtccgacgaatt
gcagaggatcttcttgttcaccctgtccaggtgaccattggaagtgttgatgagcttgtt
gctaatagtgctattactcagaatgtggagctgatcacaccgtccgaaaagcttcgccgt
ctggagcaaattttgcgatcccaggattcaggttcgaaggtactaatattctgtaccact
aagagaatgtgcgaccaacttgcaaggacacttactaggcaatttggagcttctgccatt
catggtgataagtcccaaagtgaaagagagaaggtcctgagccattttagatctgggcga
tctcctattttggttgcaacagatgttgctgcacgaggcttagacatcaaagatatcagg
gttgtgatcaattatgatttccccactggcattgaagattatgttcaccggattggcagg
actggaagggctggtgccactggtgtggcctatacgtttttctgtgaccaggattcaaaa
tatgctgctgatcttattaaaattctggaaggcgcaaaccaacgtgtgcctcgtgacttg
gcggacatggcctctcggggtgggcgtggtggtaggaagcgtaaccggtgggcaacccgc
tctgataggggtggttcgcgttctgaactggattctaggtatggtggaagagatggtctg
tcagggtcttctggcagattggatagtagtcgcagtagtcgcaggcatgactatggtgat
gatggacggtctcgcaggtctgggagaggtcgcagtaggagccgtagcagaagtgacagt
gataggtatagccgaagtcctaagaggtcacgccgtcatagccgtagcaggaccaggagt
cggagccgaagcaggagcaggagctacactaggaaccgtcgtgctagccgcagcaggagc
cgtagccctggtgctagccgtaggcatgaaagaagcgctactggctctgggtctgcactg
ccagactctgggcacggtgagcgcaaaagaacaccagaagctgacccatcaagaaaccat
acaaaccactcagacccgaaagatgaccgacacccagaggatgggaaggtgggaaaggtt
gatctcgatcggtcgcctactccacaagacaagtctggcccatatagtcctgcttacaat
ggaaaaaccagtcgctcagtgagccctggtaatcaggtggaaggaaacaacaaagctgcg
gaggtttctaagaatcctgatccttcatcgccaccccatcatggtaagaccagggaggac
gaagaggaaggtatgatagatgaagatggagagatagctgatgatcctcgggcaaatgca
accgtgcagaatggcggtgataattga
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