Oryza glaberrima (African rice): 127778331
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Entry
127778331 CDS
T08853
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127778331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127778331
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
127778331
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
AAA_34
Motif
Other DBs
NCBI-GeneID:
127778331
NCBI-ProteinID:
XP_052160877
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Position
7:26394934..26402082
Genome browser
AA seq
1334 aa
AA seq
DB search
MLKGPVDHRSHPISATPFEVFYDGSWHGVNCIRIRNGNLFVKFIYSGSTVEHNVDGDCLR
LRSRRATCSDCSNVLKPGVDVCVQSSHTPEASSQGGTNASVLLRHDARLITIKKNHQEDK
CLCLFVVILYKNQCPGNAEKVITDRRAEVVTINDIFLLQKLQPEIHEGSMKWSFSKDRLS
LNKGRLISARFSSEITHLIVLSILRGMEFNIKLVEGQIVYQIIKGDQAQWNLDSMAIPPG
FGNTMEIISFQLRDEALRPTITNIPITHVKKNNITEDMRFTVKSEMDSELDRALDVEILY
EHVDLRRSKRLKTQPDRFTSYDTPRFLSGYKKKEASSSPTKHVRGAVHCDSPVDDSKKEV
ESCCVEIPGNVTQKQTGVHSPMVDEKSNSPEGQHKNTTKRTTCSLVKEKASSQEGQHEKT
TKRTTCALPVKEKASSPEGQHKNTMKRTTCSLPVKEEPSSVEIEEKSSKEQSAPEFHIPR
TPAQNKEKHNRPPFSCKPKLFTSSGTLGVNSEPAFCQKVGGKRKRHMCEREYKQMIDQCI
GNIESEMERDSMFNFDANMMNYVQHSYREEDFTWPPSADNQEVEEDELEELWKEMDYSLT
TLALLEQKQVMAQSRINMLVDNFDGLRLDCLTLTDDYRCYYQKKEKFAESGSVNESTDYF
GKVGGIPCHHECILDEELGLACRLCNVVCTEAKDIFPEMFNGNDYKDRPGCSNICLDDDI
LDPSLLANLAPELSELKNSGNVWSAISDLDPKLLPHQRKALDFLWKNLAGSIQVEGMDNS
NVSTGGCVIAHTPGSGKTLLLISFLVSYMKAHPRSRPLVLTPKAAIHTWKREFEKWGISL
PLHVFHHANRSGKPLGAMDSKLRSLLNNFHRPTWTNMRLMDSLDKLFKWHAHPSVLLMTY
SSFLGMTKQDSKVRNRYREFIAEVLMNNPGLLILDEGHNPRSNKSKLRKLLMKVKTEFRI
LLSGTAFQNNFEEYFNTLCLARPRFIGDIMSELVPERKRETVGRRAKHQEAVARRAFVEK
VGQKIESDNKHIRSDGISLLNKLTRGFIDSFEGAKLINLPGIHVYTVFMKPTDIQEEMLA
KVTMPKLGSSRFPLEVELLITIGSIHPWLIKTTKAVSTFFSPAEVKKVERYKRDFAAGCK
AKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFGWRLGEEVLVLQGDQELPVRS
DVMDKFNGDSAGKRKVLIASTTACAEGISLTGASRLVMLDSEWNHSKTRQAIARAFRRGQ
ERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVFLGRYVDDSSQNRVTDIDDEVLKELAD
EDHTGTFHMIVKQD
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagggacctgtggaccatcggagccatcccatcagtgcaactccatttgaggtg
ttttatgatggatcatggcatggggtaaattgtataaggataaggaacggcaacctgttt
gttaaatttatctactctggatcaacagtcgagcataatgttgatggggattgtctacgc
ttacggtcgagaagggcgacttgttctgattgctcaaatgttctcaagccaggtgttgat
gtctgtgtgcagtcatctcatacacccgaagcaagttcacaaggaggaacaaacgcttct
gtgttactgcgtcatgatgcaaggcttatcacaatcaagaagaatcatcaagaagataag
tgtctctgcttgtttgttgttatactctacaagaaccagtgtcctggcaatgcagaaaag
gtgataactgatagaagagcagaggtagtaaccataaacgatattttcctcctgcaaaag
cttcaacctgagatccatgaaggaagcatgaaatggagtttttcaaaggatcgcctctct
cttaataaaggcaggctaataagtgctagattctcctcagaaattacacatctgatagtc
ttgtcgatcttgaggggaatggaattcaacatcaaattggtagaaggccagatcgtttat
caaataatcaaaggagatcaagcacaatggaatcttgattccatggccatccctccaggc
ttcgggaatacaatggagataatatcattccaattgcgtgatgaggccttgcgcccaaca
atcacaaatatccctatcactcatgtgaaaaagaacaatatcacagaagacatgagattc
actgtgaagagtgaaatggatagtgaactggatagggcattagatgttgagatcttgtat
gagcatgtggatctgaggcgttcaaagcgcttgaagactcagccagatcgctttacaagt
tacgatacacctaggttccttagtggctacaagaagaaagaagcaagttcatcacccacc
aagcatgtaaggggagctgtgcattgtgattcaccggtagacgattccaaaaaagaagta
gaatcatgctgtgtagagattccagggaatgttacacagaagcaaacaggtgtacactct
cccatggtcgatgaaaagtcaaactctccagaaggacagcataagaacacaactaagaga
actacatgctctcttgtgaaggaaaaagcaagctctcaagaaggacagcatgagaaaaca
acaaagagaactacatgcgctttgcctgtgaaggaaaaagcaagctctccagaaggacag
cataagaacacaatgaagagaactacgtgctctttgcctgtgaaggaagagccaagctca
gtggaaatagaggagaaaagctcaaaagagcaaagtgcaccggagtttcacattccacgg
acacctgcacagaataaagagaagcataatcgtcctcctttctcatgtaagccgaagcta
tttacttcatcaggcacccttggtgttaactctgaaccagcattctgccaaaaggtgggc
gggaaaagaaagaggcacatgtgcgagagagaatacaaacaaatgattgaccaatgcata
ggaaacattgagagtgaaatggagagggactctatgtttaacttcgatgccaatatgatg
aattacgttcagcattcttatcgagaagaggattttacatggccaccttctgctgataac
caagaggtggaggaggatgagcttgaagaactgtggaaagaaatggattattcactgacg
acattagcacttcttgagcaaaagcaggtgatggctcaaagtaggataaacatgctggtg
gataattttgatgggttgaggctggattgtttaactttgacggatgattacagatgctat
tatcaaaaaaaagaaaagtttgcagagtcaggatcagttaatgagagcaccgattatttt
ggaaaagttggaggaataccatgccatcatgaatgcatactggatgaggagcttggacta
gcatgcagattatgcaatgttgtatgcactgaggcaaaggatatatttccagaaatgttc
aatggaaatgactacaaggacagacctggatgcagcaatatttgccttgatgatgatata
cttgatccttctcttcttgcaaacttggcaccagagttgtcagaattgaagaactcaggg
aacgtgtggagtgcaatatctgatcttgatccaaagctgcttcctcaccagagaaaagca
ctagatttcctgtggaaaaatttggcggggtcgatacaggttgaaggaatggataactca
aatgtcagtacaggtggctgtgtgatagcacacactcctggatctgggaaaacactgctg
cttatctcatttctggtgagttacatgaaagctcacccaagaagccggccattggtcctt
actccaaaagctgcaattcatacatggaagagagaatttgagaaatggggcatttcactt
cctttacatgtgttccaccatgctaacagaagtggcaagccgttgggggcaatggattct
aaactgcggtcgttattaaataattttcacagaccaacctggacaaatatgcgccttatg
gattctttggacaaactattcaagtggcatgcacatccaagcgtcctcctcatgacatac
tcatctttcttagggatgacgaaacaagactcaaaagtgcgaaaccgataccgagaattt
atcgcagaagtcctgatgaacaaccctggactcttgattcttgacgaggggcacaaccca
agaagcaacaagtccaagttgaggaagctgctgatgaaggtgaagactgagttcagaatc
ctcttatctggcacggccttccagaacaactttgaagagtacttcaacaccctatgtttg
gccagacctcggtttatcggtgatatcatgagtgaactagtgccagagaggaaaagagaa
acagttggcaggagagccaaacatcaagaagcagtggcacgccgcgcctttgtggagaaa
gtggggcagaagattgagtctgacaacaaacatatcagaagtgatggtatcagtttgcta
aacaagcttactcgtggattcatagattcattcgagggagcgaagctgatcaaccttcca
gggatacatgtgtataccgtgttcatgaagcccacggacattcaggaggagatgctggca
aaggtaacaatgcccaagctcgggtcgtcccggttccctctagaggttgagctgctcatc
acgattggctccatccatccttggctcataaaaacgacgaaggccgtcagcaccttcttc
agtccagccgaagtgaagaaggttgagaggtacaagcgagacttcgcggcggggtgcaag
gccaaatttgtgatcgatctgctgcacaagtcgtcgttcagaggggagagggtgctgata
ttctgccacaacgtgtccccgatcacgttcctggtgaagctgatagagatggtgttcggg
tggcggctcggggaggaggtgctggtgcttcagggtgatcaggagctgcctgtccggtcc
gatgtgatggacaagttcaacggcgacagcgcggggaagaggaaggtgctgatcgcgtcg
acaacggcatgcgcggaggggatcagcttgacaggcgcgtcgaggctggtgatgctggac
tcggagtggaaccactccaagacgaggcaggcgatcgcgcgggcgttccggcgtgggcag
gagaggacggtgtacgtctacctcctggtggcatctgggacatgggaggaggagaagtac
aacagcaacaggaggaaagcttggatgtccaaaatggtcttcctgggacgctatgttgat
gattcctcgcaaaaccgtgtcactgacatcgatgatgaggtcttgaaggagcttgccgat
gaagatcacaccggcaccttccatatgattgtcaagcaagactga
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