Oryza glaberrima (African rice): 127778332
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Entry
127778332 CDS
T08853
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127778332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127778332
03036 Chromosome and associated proteins [BR:
ogl03036
]
127778332
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
127778332
Coactivators
SAGA/TFTC/STAGA complex
127778332
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
127778332
STAGA complex
127778332
TFTC complex
127778332
SAGA complex
127778332
SLIK complex
127778332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
127778332
NCBI-ProteinID:
XP_052160882
UniProt:
I1NNI4
LinkDB
All DBs
Position
1:complement(16627569..16634991)
Genome browser
AA seq
541 aa
AA seq
DB search
MSIVPKETIEVIGQSVGIANLPADVSAALAPDVEYRLREIMQEAIKCMRHAKRTVLTADD
VDSALSLRNVEPVYGFASGDPLRFKRAVGHKDLFYIDDREVDFKEIIEAPLPKAPLDTAV
VAHWLAIEGVQPAIPENPPVDAIVAPTENKRTEHGKDDGLPVDIKLPVKHVLSRELQMYF
DKIAELTMSRSETSVFREALVSLSRDSGLHPLVPYFSYFIADEVTRSLGDLPVLFALMRV
VQSLLHNPHIHIEPYLHQLMPSIITCMVAKRLGHRLSDNHWELRDFSANLVGSVCRRFGH
AYHNIQTRVTRTLVQGFLDPQKSLTQHYGAIQGISALGPSAIRLLLLPNLETYMQLLEPE
LQLDKQKNEMKRKEAWRVYGALLCAAGKCLYDRLKLFPNLLSPSTRPLLRSNKRVVTNNP
NKRKSSTDLSTSQPPLKKMTTDGAMNSMTSAPMPGTMDGFSTQLPNPSMTQTSSSGQLVE
STASGVIRRDQGSNHTQRVSTVLRLAWKEDQNAGHLLSSLYEVFGEAIFSFVQPPEISFF
L
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgagcatagtgcccaaagagacgattgaggtgatcgggcagagcgtcggcatcgccaat
ctccccgccgatgtctccgccgcgctcgcccccgacgtggagtaccgcctccgcgagatc
atgcaggaggccatcaagtgtatgcggcatgcaaagaggacagtcctgactgccgatgat
gttgatagtgctctcagcctcaggaatgttgagcctgtatatggatttgcttccggtgac
cccttgcggtttaagagagctgtgggacacaaggatctcttctatattgatgacagggag
gtagacttcaaagagattattgaggcccctctacctaaagctcctcttgatacagcagtt
gtagctcactggctagccattgagggagtccagcctgcaattccagagaatcctcctgta
gatgctatcgtagcaccaacagagaataaaaggacagagcatgggaaagatgatggactt
cctgttgacatcaagcttcctgttaagcatgtgttatctagagaactccagatgtatttt
gataaaatagcagagcttacaatgagtagatctgaaacctcagtttttagagaagcatta
gtgagcttatcaagagactcaggccttcatccgttggttccttacttttcctacttcatc
gccgatgaggttacccggagtttaggtgatcttcctgttttatttgctctcatgcgtgta
gtccaaagcctcctacacaatccccacattcatattgaaccatatttgcatcagttgatg
ccgtcaattatcacctgcatggttgcgaaaaggcttgggcataggctttcagacaaccat
tgggagcttagagacttctctgctaatttggttggttcagtatgtcgaaggtttggtcat
gcgtatcacaacatccaaacccgggtgacaaggacgttggtccagggatttcttgatcct
cagaaatcattgacacaacactatggtgcgattcaagggatatctgcattggggcccagt
gcaattaggcttctgcttttgcccaacctcgagacatacatgcagcttttagagccggaa
ttacaacttgataagcagaaaaatgagatgaaaagaaaggaagcatggcgtgtttatggt
gccctgctgtgtgctgcaggaaaatgcttatatgatcggctcaagttgtttcctaatttg
ctttctccatcaacacggcctcttttgaggagtaataagagagtcgtgactaacaaccca
aataaacggaagtctagtacagatctctccacatcccagccacctctgaagaagatgaca
acagatggtgcgatgaattctatgacttcagctcccatgccaggaaccatggatggcttc
tccacccaattacccaaccctagcatgacgcaaacttcatcctctgggcaattggtggaa
agcaccgcatcaggtgtgattcggagggatcagggaagcaaccacacacaaagagtttcc
acagtgctgaggctagcctggaaggaggaccaaaatgctgggcatctgttgagttcattg
tacgaggtattcggtgaagccatcttctcctttgttcaaccaccagagatatcgttcttt
ttgtag
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