Oryza glaberrima (African rice): 127778400
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Entry
127778400 CDS
T08853
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127778400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127778400
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
127778400
Prokaryotic type
Archaeal type
TFB
127778400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
HTH_Tnp_ISL3
Zn_ribbon_tTFIIB
DUF7573
Motif
Other DBs
NCBI-GeneID:
127778400
NCBI-ProteinID:
XP_052160955
UniProt:
I1QAX6
LinkDB
All DBs
Position
7:16964551..16965680
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AA seq
354 aa
AA seq
DB search
MYGSPDGVRYCQQCERTTSMVLDHDTGDAICTECAIVLGNGNDPRRPAVASAATKHGGAD
APADDDPLLQGSDVVAAAAAEVACSVAPTKLQAEGAAPAAPPRMRGAVVAPKVRGGGGGA
VTKAQGGVPDTNKSLAEGFDAIDNMASRLGLAGNVRDRGKDVLRKVEEAKVCARGRSRDA
LYAACLHTACRMEGAPRTLKELIAATPDAAATKRDLGKFIHAIKRLLGSNDEEAEAGQDQ
AGSKATNGCGGGGGAGAVVRASDYLLRYGSAVGMSGQEVSAAQRAASRLDESLDVRRNPQ
SIAAAIIYMAVQRAGGGGGRSKSVREVSAATGVSESTIKDAYKDLCQHAEVLFG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgtacggctcccccgacggcgtccgctactgccagcagtgcgagcgcaccacgtccatg
gtgctcgaccacgacaccggcgacgccatatgcaccgagtgcgccatcgtgctcggcaac
ggcaacgacccgcgccgccccgccgtcgcctctgcggccaccaaacacggcggtgccgac
gctcctgccgatgatgatccgttgctccagggcagcgacgtggtcgccgccgccgccgcg
gaggtggcatgctccgttgccccgaccaagctgcaggctgagggcgctgcgccggcggcg
ccgccgaggatgcggggcgctgtcgtggcgccgaaggtgcgaggcggcggtggcggcgcc
gtgacgaaggcccagggcggcgtccccgacacgaacaagtcgctcgccgaggggttcgac
gccatcgacaacatggcgtcccggctcgggctcgcgggcaacgtgcgcgaccgcgggaag
gacgtgctgaggaaggtggaggaggccaaggtttgcgccagggggcggagccgggacgcg
ctctacgcggcgtgcctccacaccgcgtgccgcatggagggcgcgccgcggacgctcaag
gagctcatcgccgcgacgcccgacgcggcggcgacgaagagggacctgggcaagttcatc
cacgcgatcaagaggctcctcgggagcaacgatgaggaggccgaggccgggcaggatcaa
gcgggcagcaaggcgacgaacggctgcggcggcggcggcggcgccggcgcggtggtgcgc
gccagcgactacctgctccgctacgggtcggcggtcgggatgagcggccaggaggtgagc
gcggcgcagcgcgcggcgagcaggctggacgagagcctcgacgtgcggcgaaacccgcag
tccatcgcggccgccatcatctacatggccgtgcagcgcgccggcggcggcggcggcagg
agcaagagcgtccgcgaggtgtccgccgccacgggcgtcagcgaatcgaccatcaaggac
gcgtacaaggacctgtgccagcacgccgaggtgctcttcggctaa
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