Oryza glaberrima (African rice): 127778460
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Entry
127778460 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127778460
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127778460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127778460
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127778460
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
127778460
Messenger RNA biogenesis [BR:
ogl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
127778460
DNA repair and recombination proteins [BR:
ogl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
127778460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-GeneID:
127778460
NCBI-ProteinID:
XP_052161025
UniProt:
I1QD96
LinkDB
All DBs
Position
7:25830652..25837840
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AA seq
886 aa
AA seq
DB search
MEAALKTYFGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS
PLLSLMQDQVMSLKQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWS
NLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGDIA
TSLTLRNPHIVVGSFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCTTIRE
TEQVHEALVAAGIKSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCV
IHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDFMKSDFYCAEAKSQTHRKAIMESF
MAAQKYCLLATCHRKFLLQYFGEDRTTDCGNCENCTRTKNERDLSKESFLLLSCIKSCGG
RWGLNLPIDVLRGSRVKKIVENNFDKLPLHGRGKDYPPNWWKALGGLLLAHDYLKETVHD
TFRSISVSPNGYKLLSTADKGDGASLFLQLTAEMIELEGHGGSQCKEEGLNPLGPSESEK
ISEDELKIYQVLLNVRMQLAQDIGTAPYAICGDQTLRNFAKFRPSTIARLANIDGVNQHF
ISHYGSIFIQNITQLAKELNLPVDDLSAVESIPAAPKPTQNNLPRSLGGAKFCSWELWQK
MKFSFQKVAHYRRAVPIKEKTVISYILDAARDGCEMDWSRFCEEVGLTHEIASQIRLAIT
KLGSHEKLKPIKDELPENVTYEMIQTFLAIEGLGLSDQVFGTVPTDGIQSKTSEAPKTTS
NGSEVGADVCDASPLTKRGQTDGSLICGDEPASKLQKIDGQGVNSTAATGATEDAILELV
EGRNGVSLEDVVKHFNGSKRECVVEMLDNLEGNFLVYKKNGCYMIM
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagctctgaagacgtatttcggcttctcggggttccgttcgtaccagcgggag
atcatacagaaggtcctggaaggccgggattgcttggtcgtcatggccaccggcagcggc
aagtcgatctgttatcaaatcccaccacttgttacaaagaagacagctgttgttgtcagc
cctcttctgtcattgatgcaagaccaggtcatgagcttaaagcagcatggcgtgaagtct
gaataccttggcagcacccaaacagacatctctgttagcggtcaggctgaaaaaggcgca
ttcgatgttctgtacatgacaccagagaaagctgtctcacttccttcaaggttttggagt
aacttgcaggctgccggaatctgcttgttggctgtcgatgaagcacactgcatatcagaa
tggggccacgatttcagaacggagtacaaacagttgcatatgttgcgtgaccttcttgtg
ggtgttccctttgtcgctttaactgcaacagccacacaaagggtacgtggagacattgcc
acttccttgaccctgcgcaatcctcacattgtggtaggatcatttgatcgtcctaacctt
ttctatggcgtgaaatcatgcaaccggtctatggcctttatcaatgaacttgtgaaggat
gtctcaaagaactgtactgtgggtggctcaacaataatatactgtactaccatccgagag
actgaacaggtgcatgaggcattggttgctgctggaatcaagtccagcatttaccatggt
agaatgggaaataaagctagagaggaatcacatagatcgtttgttagagatgaagtactt
gtgatggtggctaccattgcttttggaatgggaatcgacaagccagatgttagatgtgta
atacattatggatgtccaaagagcctggaatcctactaccaggaaagtgggcgttgtgga
agagatggactgccttcagtctgctggctatattaccaaagaagtgattttatgaaatct
gatttctattgtgctgaagctaaaagtcaaactcatcgaaaagccatcatggagtccttc
atggcagcacaaaaatattgcctgcttgctacatgtcacagaaaattcttgctgcagtac
tttggcgaagaccgcaccactgactgtggtaattgtgaaaattgcacaaggacaaaaaac
gagagggatttgtcaaaagaatccttcttgttgctgtcctgcattaagtcctgtggtgga
cggtggggccttaatttgcctattgatgttctccgtggatcacgtgtcaagaaaatcgtt
gaaaacaattttgataaacttccattgcatgggcggggaaaagactatccaccaaactgg
tggaaagctcttggcggcctgcttttagcacatgattatttaaaggagactgtccatgat
acatttagatccatcagtgttagtcctaatgggtacaagcttctatccactgctgataaa
ggggatggagcatcgctgtttttacagctgactgcagagatgattgagctagaggggcat
ggtggttcacagtgtaaagaagagggcttaaatcctttgggcccatcagaatctgaaaaa
atttctgaggatgaattgaaaatctaccaagtactcttgaatgtcaggatgcaacttgca
caagatattggaacggcgccgtacgctatatgtggtgatcagacactaagaaactttgcg
aagttcaggcctagcaccatagctaggttggctaatattgatggtgttaaccagcacttc
atctcgcattacggcagtattttcatccaaaatatcacacaattggcaaaagaattgaat
cttcctgtggatgatttatcggctgtagaaagtatacctgctgctccaaaacctacacaa
aataatctcccaaggagtttgggtggcgcgaaattttgttcatgggaattgtggcagaaa
atgaagttttcgttccagaaagttgcgcattaccgcagagcagtaccaataaaagagaaa
acagtcatttcctacatacttgatgctgctcgagatggatgtgagatggactggagtagg
ttttgtgaggaggtaggacttacacatgagatagcctcacagatccgtcttgccattaca
aagcttggatcacatgaaaagttgaagccaatcaaagatgaacttccagaaaatgtaact
tatgagatgatccagacattcttggcaattgagggacttggattgtcggatcaagttttt
ggtactgttcctactgatgggatccagtccaagacatcagaggcaccaaagaccacctcc
aatggaagtgaagttggcgcagatgtttgtgatgcaagccctttgacaaagagaggccaa
actgatgggtcattgatttgtggtgatgagccagcaagtaaactacaaaagatagacggg
caaggtgtaaattctactgccgcaaccggtgccacagaggatgcaatactagaactggtt
gaaggacgcaatggggtttcgttggaggatgttgtcaagcacttcaatgggtcgaaaaga
gaatgtgtcgtcgagatgttggacaatctggaaggcaattttctggtgtacaagaagaat
ggctgctacatgattatgtga
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