Oryza glaberrima (African rice): 127778796
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Entry
127778796 CDS
T08853
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB5
KO
K10845
TFIIH basal transcription factor complex TTD-A subunit
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03022
Basal transcription factors
ogl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127778796
09124 Replication and repair
03420 Nucleotide excision repair
127778796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127778796
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127778796
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127778796
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127778796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb5
Motif
Other DBs
NCBI-GeneID:
127778796
NCBI-ProteinID:
XP_052161380
UniProt:
I1QEH5
LinkDB
All DBs
Position
7:complement(20705247..20706867)
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AA seq
132 aa
AA seq
DB search
MPDLRLRSSALSRAPPPPPLLQAPCSSPVCSYRSVQRRTGAREDNSTGRRQRWHSVLQRA
ENMVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRSKIS
EFRDQNSYEKPT
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacctccgcctccgatcctccgccctgagccgcgcgccgccgccgccgccgctg
ctgcaggctccttgttcctcgccggtttgctcgtatcgctccgtacaacgacgcaccggt
gctagagaagacaacagcacagggaggcgacaaaggtggcattctgttctccaaagagca
gaaaacatggttaatgcaataaaggggttgttcatctcctgcgatgtaccgatggcacag
ttcattgttaatctgaatgcttcaatgcccgcttcggacaagttcatcctgcacatgctt
gacccgacacacatgtttgtgcagcctcatgtggcggagatgatcagaagtaagatttca
gagttcagagaccaaaacagctacgagaagccaacatga
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