Oryza glaberrima (African rice): 127778812
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Entry
127778812 CDS
T08853
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127778812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127778812
03036 Chromosome and associated proteins [BR:
ogl03036
]
127778812
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
127778812
Coactivators
SAGA/TFTC/STAGA complex
127778812
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
127778812
STAGA complex
127778812
TFTC complex
127778812
SAGA complex
127778812
SLIK complex
127778812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_IP5PC_F
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
RecX_HTH3
WD_LRWD1
PALB2_WD40
WEF-hand
Motif
Other DBs
NCBI-GeneID:
127778812
NCBI-ProteinID:
XP_052161400
LinkDB
All DBs
Position
7:5691503..5703320
Genome browser
AA seq
666 aa
AA seq
DB search
MEDEEMEKKVHQYLQRKGFRVAGLALLEDRTRLSATTTTTTTASSSSHSLSDAALSRSEN
DPARYYDGYSKLRTWAYSYLDHYKHELLRILYPLFFHCFMDLVAEGHTQEACSFFHTFRE
DHEHSRDLKKLESILSPLHLEQMEVARSLRQNKFRIKLCEYSYELLLQYLHKTQALVVLG
IINERIDFQVSPGQSPLIIDDSDAVVLIGTSKDLTKQINQKEVHWGILEDSLEERMEKAI
SDSDKTEIESKDADTEDNKKRSSEGGKQGGSHKKIKKDKFVGTTGKNMKSETSMVSIAPR
VKPELTLPMTSVEVEQSILEDLRNRAQLNSLSLPSVSFYTFLNTHNGLNCSSISQDGSLV
VGGFADSSVKVWDMSKIGQPSKASCSQGENGPSQIERVSTSDEARKSCTLFQGHSGPVYS
TMFSPIGDFLLSSSADSTIRLWNTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRT
ARIWSMDKIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGH
RSMVLSLAMSPDGRYMASGDEDGTIMMWDISSGCCVSPLVGHNSCVWSLAYSCEGALLAS
GSADCTVKLWDVASSTKTLKMDDTKGGSANRLRMLKALPTKSTPVYTLQFSRRNLLFAAG
APSLGS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaggtgcaccagtacctgcagcggaagggcttccgc
gtggcggggctcgcgctgctcgaggaccgcacccgcctctccgccaccaccaccaccacc
accaccgcctcctcctcctcccactccctctccgacgccgcgctctccaggtcagaaaac
gatccagcgaggtactatgatggctatagtaaactaagaacatgggcatacagttatctt
gatcactacaagcatgaattactccgcattctttatccactatttttccactgcttcatg
gatttagtggcagagggacatacacaggaagcttgctcatttttccacacatttcgtgaa
gaccatgaacactcgagggatctcaagaagctggaaagcatcctttctcctttacatttg
gaacaaatggaagtggctcgatctttaaggcagaataaattcagaattaagctatgtgag
tattcatatgaattgcttctccagtatctccacaaaacacaagctcttgtggtgcttgga
ataatcaatgaacgcatagattttcaagtatcccctgggcagtctccattaatcattgat
gactcggatgctgttgttctgattggaactagcaaggacttgacaaaacagataaatcag
aaggaggtgcattgggggatacttgaagattcacttgaagaacgtatggagaaggcaatt
tcagattctgataaaactgaaatagaaagcaaggatgcagacacagaagacaacaagaaa
agatcctcagaaggtggaaagcagggtggctcacataaaaagatcaaaaaggacaagttt
gtaggaaccacagggaaaaacatgaaatctgaaactagcatggtttctatagcaccacga
gttaaaccagagctaacgcttccaatgacgtctgttgaagttgagcagtcaattcttgag
gacttgcgaaaccgtgcacaattgaatagcttgtcattgccatctgttagcttctataca
ttccttaatacacataatgggttaaattgctcatcaatttcgcaagatggttcattggtc
gttggtggattcgctgattcatcagtgaaggtttgggatatgtcaaagattggccagcct
tccaaagcatcttgttcacaaggcgagaatggaccctcccagattgaacgggtatcgaca
tcagatgaagcgcggaaatcctgtacattattccaaggtcattctggaccagtttattct
accatgtttagcccaattggggacttcctcttgtcatcatctgcagactcaacaattcgc
ttatggaacaccaagttgaatgctaatcttgtttgctacaaaggacacaactaccctgtt
tgggatgtccaatttagtccagttggacattactttgctagtgcttcgcatgacaggact
gctagaatctggtccatggataaaatccagcctttgagaataatggctgggcatttatct
gatgttgattgtgtgcaatggcatgtcaactgcaactacattgccactggctccagtgac
aaaacagtaagactatgggatgttcaaacaggtgaatgtataaggatgtttattggccat
aggagtatggttttatcattggcaatgtctcctgatgggcgatacatggcctctggagat
gaagatggaacaatcatgatgtgggatatatcttctggttgttgtgtttcaccgctagtg
ggacataactcttgtgtgtggtcgcttgcttacagctgtgaaggggcattacttgcatct
ggatcagccgactgcactgtaaaactatgggatgtcgcctccagcactaagactcttaag
atggatgataccaaaggtggttcagctaaccgactgaggatgctgaaagccctccctaca
aaatcaacccctgtttacactctgcagttttctcggaggaatcttttatttgcggctggt
gctccctcacttggctcctaa
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