Oryza glaberrima (African rice): 127778913
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Entry
127778913 CDS
T08853
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 30-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127778913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogl03041
]
127778913
03009 Ribosome biogenesis [BR:
ogl03009
]
127778913
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127778913
Spliceosome [BR:
ogl03041
]
Complex A
U1 snRNP components
U1 related factors
127778913
Complex B
127778913
Ribosome biogenesis [BR:
ogl03009
]
Eukaryotic type
Pre-60S particles
Helicases
127778913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
127778913
NCBI-ProteinID:
XP_052161525
LinkDB
All DBs
Position
1:complement(36406260..36410563)
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AA seq
664 aa
AA seq
DB search
MRTSRVASXPPSPKDHDTWAIATDLARPHTLRILTHQNQTTGHLAPPHAAFLPDPNLTRR
LPFPSSSSTPTAAAPPDSGEPSRARARTETYRTGDMNPYDLRYADPSSYRDRRSDLAGAP
VLAASAPAAANPYAAAYAPAPAAPVAPAGADFSRFGGRGRGGGAGGGGWGRGGGGGAGGY
RGGGGRGGGRDALDSLSLPKPDFRSLIPFEKNFYVECPAVQAMSDMDVSQYRRQRDITVE
GHDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKT
LSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGA
PKGPQIRDLRRGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKI
VAQIRPDRQTLYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEK
YPRLSKLLSDLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEF
KSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTH
SNAKFSRNLVKILREAGQVVNPALESMAKSASSMGGGNFRSRGRGGFGNRSGSNSIPIRG
RRPY
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacgagccgcgtcgcgtctncacccccctcccccaaggaccatgacacgtgggcc
atagcaaccgacctagcccggccccacacgcttcgcatccttacccatcaaaaccaaacc
acgggccacctcgccccgccgcacgccgccttcctcccagatccaaacctcactcgtcgt
ctccccttcccctcctcctcctcgacccccacggcggcggcgccaccggactccggcgaa
ccctcgcgcgcgcgcgcacgcaccgagacgtaccgtaccggcgacatgaatccctacgac
ctccgctacgccgacccttcctcctaccgtgacaggcgcagcgaccttgccggggctccc
gtgctcgccgcgtcggcccccgcggccgccaacccctacgccgccgcgtacgcgcccgcg
ccggctgctcccgtggcccccgctggtgccgacttctcgcgcttcggcgggagaggccgt
ggtggaggcgcgggcggcggtgggtggggtagaggtggtggtggtggcgctggcggatac
cgaggcggcggtgggagaggaggtggaagggacgcgctggactcgctctccttgccgaag
cctgacttccggagccttatacccttcgagaagaacttctatgtggagtgccccgccgtg
caggccatgtcagacatggatgtgtcgcagtatcgtcgccagcgtgatatcactgttgaa
ggccacgacgtgcccaagccggttcgctacttccaggaggccaacttcccagattactgt
atgcaagcaatagccaagagtggattcgtagagcccacgcctattcagtcacaaggttgg
ccaatggctttgaagggcagggacatgatcggtatcgcacaaactggctctgggaaaaca
ctatcttaccttctccctgggttggttcatgttggtgcacagcctcgactagaacaaggt
gatggcccaattgttctgatccttgctcctacaagagaactggctgttcaaatacaacaa
gaatctggcaaatttggatcatactcaagaactagaagcacttgtatctatggtggagca
cctaagggaccacaaatacgtgaccttaggagaggggttgagattgtcattgcaacacct
ggtcggttgatcgatatgctggaaggtggtcacactaacctgcgaagagtaacatacctc
gtcctggatgaggctgaccgcatgcttgacatgggttttgagccccagattcgtaaaata
gtggcacagatccggccagataggcaaaccttgtattggagtgccacttggccaagagaa
gtagaatccttggctagacaatttctgcagaacccatacaaggtaatcataggatcacct
gatctgaaagctaatcattccatacagcaaattattgaggtcatatctgaacacgaaaaa
tatcccagactcagtaaacttttatctgatctaatggatggaagcagaatcttgatattt
ttccaaactaaaaaggactgtgacaaggtcactcgtcaacttagaatggatggatggcca
gcattatctattcatggtgacaaagctcaagcagaaagggactatgttctggcagagttc
aagagtgggaaaagtcctataatggctgccacagatgtagcggcacgtggtcttgatgtc
aaggatattaagtgtgtgataaattttgattttccaacaactcttgaagattatattcac
agaataggtcgaactggccgcgctggtgctagtggaactgcattcacctttttcacacac
tccaatgcaaaattctccaggaatcttgttaagatcttgagggaagctggccaggttgtg
aatccagcgctagaatctatggctaaatctgccagttctatgggaggaggcaatttccgg
tcaagggggcgtggtgggtttggtaacagatctggctcaaatagcattcccataagagga
agaaggccatactga
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