Oryza glaberrima (African rice): 127779016
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Entry
127779016 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127779016 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127779016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127779016
03041 Spliceosome [BR:
ogl03041
]
127779016
03036 Chromosome and associated proteins [BR:
ogl03036
]
127779016
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
127779016
Spliceosome [BR:
ogl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
127779016
Complex B
127779016
Complex C
U2 SnRNP specific factors
127779016
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
127779016
TFTC complex
127779016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
DUF4653
Motif
Other DBs
NCBI-GeneID:
127779016
NCBI-ProteinID:
XP_052161625
LinkDB
All DBs
Position
7:complement(5607966..5620894)
Genome browser
AA seq
1366 aa
AA seq
DB search
MESPTAGGGGGGGEAGAASSSSSSSGPSTSSAAAAATASASASSSAVATRYLAKRVLRGS
AVLHVAQGCFRSPDCVDVVLCKENSLELVVIGEDGVLQSICEQTTFGIIKDVGVLNWRCT
HFGLMPKIEGKEILVILSDSGKLSLLYFCSEMHRFFAIVNIELSKPGNLRHRLGRILAID
RESRFVAVSAYEDEFAFVRVSVDHKLHAPNGGKISEKYFYPPEIEEDAKIISTAYNTSSI
HGTVWSMCFISTCLDEEYYPVVAMIVNRGSDVNDLALYGLDSHKRTIDRISTYLEAGPLA
LEISEIPQLYGFALMFRAGDVLLMDLRNPKDISCIHRISLSTSLIGDHVSVEDSCRGLDV
DDDVAACALLELRDSGNNMMRDDSYMDIDGTDNKAVVKSRIVCSWNWEPNAMQGHPRLIF
CLDDGEFHLLEFSLDMEGVKVLPECVHRGLPCKPLLWMDKGMVVGFVEMGDGMILQLENN
RLVHKSAIQNVAPILDLAIADHHGEKQDQMFACCGMCPEGSLRVIRNGVNVEKLLRTDPI
YHGVTGLWTLRMKRTDAYHSFLVLSFVEETRILSVGLSFNDICDAVGFQTDVCTLACGLV
ADGLLVQIHSKCVKLCLPTACAHPEGTLLPSPVCADWYPDVTISVGAVGHNVVVVATSNP
CCLYILGVRSLSSFQYELYEIQHVQLHYEVSCISIPQEDWRLDNSSSSCATSGDFRKDFA
ANIRKFAVIGTHEPSVHIISLEPGEAFQQLAVGHISVNNALGTPISGCIPENVRFVVAAR
FYILAGLRNGMLLRFESQTSKGHCFPGSFYKESSTPCDDTSLMLIAVRRIGITPVVLVPL
HDRANADVIVLGDRPWLLHSARHSLAYSSISFLPASHVTPVSSTDCPNGLLFVSENCLHL
VEMVHGKRLNAQKFSIGGTPRKVLYHSDSRTLLVLRTGLTSVSCSSDIVQIDPSNGALLS
RFKCEPGETAKCMQIAKIGNDQVLIVGTSKSNGRPMMPNGEAESIKGRLILLSLETIESP
RESGSFTAASNLNSSHAGSPFPEFVGYAAEELSSNSMCSSPDEVCCNQIQPELMAGHLRS
LVQHTFNGAVLAVHPYLDRYVLAAAGNVLFVFGFLNESPHRIKKYTTSRTRFTITCLKTY
ASRIAVGDCRDGVLFYSYHENLRKLELIYSDPAQRLVGDVALLSCETAVVSDRRGSISVL
SCPRLEVSESPEKNLAVHCSFYMGETAMSIQKVAFKHWLPIDDLTEPVLESVYNCVVAST
LLGSIFVMIPLTSEEHQMLQDVQERLSVHPLTAPLLGNDHAEFRRRGIPSGVPPILDGDM
LVQFLELTSEQQHDVLNIVSPGKKRQHDISVFQVMRALERVHYALN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccccaccgccggcggcggcgggggagggggcgaggccggcgccgcgtcgtcg
tcgtcctcctcctcgggcccctccacatcgtccgccgccgccgccgccaccgcatcggca
tccgcgtcctcatcagccgtcgccacccgctacctcgccaagcgcgtgctccgcgggagc
gccgtgctccacgtcgcccagggctgcttccgctcccccgactgcgtcgacgtcgttctc
tgcaaggaaaattcactggaattggttgttattggtgaagatggtgttttacaatcaatc
tgtgaacaaaccacatttggtattataaaagatgttggtgtcttaaattggcgctgtaca
cactttggtttaatgccgaagatagaagggaaagaaattctggttatactttcagattct
ggaaagctatctcttctttacttttgttctgagatgcataggttctttgcaattgtaaat
attgaactatccaaaccaggaaatttgaggcatcggctcgggagaattttagctatagac
cgagaatctaggtttgttgctgtcagtgcatatgaggatgagtttgcatttgtacgtgtt
tcagtggatcacaaacttcatgctcctaatggaggtaaaatttctgagaaatatttttat
ccaccagaaattgaagaggatgctaaaatcatcagtactgcatataataccagcagtatc
catggtacagtttggagtatgtgcttcatatcaacatgcctggatgaagaatattatcct
gtagttgcaatgatagttaacaggggctctgatgtaaatgacttggcactctatgggcta
gattcccataaacgtactattgaccgcatatctacttatttagaagctggacctttggca
cttgaaatctcagaaattccccaactgtatggctttgcacttatgtttcgtgctggtgat
gttctgttgatggatctgaggaacccaaaggacatcagttgtatccatagaataagcttg
tcaactagtctaattggagatcatgtctccgttgaagattcctgtaggggattagatgtc
gatgatgatgtggcggcttgtgctttgctggaactgagagactctggaaataacatgatg
agggatgacagttacatggacattgacggtactgataacaaagctgtagtgaaatcaagg
attgtttgctcatggaactgggagccaaatgccatgcaaggacatccaaggctgatcttt
tgcttggatgatggagaatttcatcttctagagtttagtttggatatggaaggagtgaag
gtattgcctgagtgtgtccatagaggtttgccttgcaaacctcttttgtggatggacaaa
ggaatggtagttggatttgtagagatgggagatgggatgatcctccaacttgaaaataac
agattggtgcataaaagtgcaattcagaatgtagcgccaatattggatctagcaattgct
gaccaccatggtgagaagcaggatcagatgtttgcatgttgtggaatgtgccctgagggg
tccttgcgagtaatacgtaatggtgtcaatgtggagaaacttctgaggacagatcctatt
tatcatggtgttactggtttgtggaccttgagaatgaagagaactgatgcttatcactct
tttcttgtattgtcattcgttgaggaaaccagaatactatcagtaggactcagttttaat
gacatctgtgatgctgtaggatttcagactgatgtttgcactctggcatgtggtttagta
gctgatggtttgcttgtgcaaattcacagcaaatgtgtaaagctttgtttacctacagca
tgtgctcaccctgagggaactttgctcccgtctcctgtttgtgctgactggtatcctgat
gtcactatcagtgttggtgctgttggacataatgttgttgttgttgctacatcgaatcct
tgttgcctttacatacttggggtcagatcattatcttcgtttcagtatgagctgtatgag
atacaacatgtccagttgcattatgaagtatcttgcatatctattccacaagaggactgg
agactcgataattcatcttctagttgtgcaacgagtggtgattttcggaaagattttgca
gctaatattcgcaagtttgctgtaattggaactcacgaaccttctgtgcatatcatttcg
ttggaacctggagaagcatttcagcaacttgctgttgggcatatatcagtaaacaacgcg
ctcggcactcctatcagtggttgtatacctgaaaatgttaggtttgtagtagctgcaagg
ttctacattcttgcaggactaaggaatggaatgctactgaggtttgagtcacaaacaagc
aaagggcattgtttccctggttccttttacaaggagtcctctaccccttgtgatgataca
tcccttatgttgattgctgtacggcgtattggaatcactcctgtagttttggtaccgttg
catgacagagccaatgctgacgttattgttctcggtgataggccttggctattgcattct
gctagacacagcttggcatattcatccatctcatttctgcctgcttcccatgtgacacca
gtgtcttctactgattgccccaatggtctgctgtttgtttcggagaactgtttgcatttg
gttgaaatggttcatggcaaaagactaaatgcacagaagttttcgattggagggactcca
aggaaagtgttataccacagtgatagtagaacactgttggtgctgagaactgggttaacc
agtgtatcctgttcttcagatattgttcaaatagatccaagtaatggggcattgctttcc
agattcaagtgtgaacctggtgaaacagcaaaatgcatgcaaattgcaaagatagggaat
gatcaagtattaatcgttggaactagtaagtccaatggccgaccaatgatgccaaacggt
gaagcagaaagtatcaagggtcgtctaattcttttaagcttggagactattgaaagtcct
cgtgagagcggttcgtttactgcagcttctaatttgaattcatctcatgctggttctcca
ttcccggaatttgttggatatgcagcagaggagctgtctagtaacagcatgtgcagcagt
cctgatgaagtttgctgcaatcaaattcaacctgaactcatggcaggccatttgagatca
ctagtccaacatacattcaatggcgctgttcttgctgtacatccatatctagatagatat
gtgttggcagcagctggaaatgtgctttttgtatttggatttttaaatgaaagtccccat
cggataaaaaagtatactacgagtaggacacgatttacaataacctgtttgaagacgtat
gcatcacggattgcagtgggtgattgccgcgatggtgttctcttctattcttatcatgag
aatcttaggaagttggaactgatctattctgatcctgcccaacggctagtgggtgatgtt
gcccttttgagctgtgaaactgctgttgtatcagatcgacgagggagcatatctgtactg
tcttgcccaagattagaagtatccgaaagtccagagaagaacctagcggtgcattgttca
ttttacatgggtgaaacagctatgagcatccagaaggttgcatttaagcattggcttcca
attgatgatttgacagaaccagtgttggagtcggtatacaactgtgtcgtcgcaagcact
ctgctggggagtatctttgttatgattccactcacaagtgaggagcatcaaatgttgcaa
gatgtccaagaaagactttcggttcacccattgactgctccactcttaggaaatgatcat
gcagagtttcgtcgccgtggtatcccgtcgggagtaccgcccattctggatggcgacatg
cttgtgcagttcctggagctcaccagcgaacaacagcacgatgttctcaatattgtttct
cctggaaagaagaggcaacacgatatctcggttttccaggtcatgcgagcattagagagg
gtgcattacgcactcaactga
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integrated database retrieval system
