Oryza glaberrima (African rice): 127779086
Help
Entry
127779086 CDS
T08853
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03013
Nucleocytoplasmic transport
ogl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127779086
03015 mRNA surveillance pathway
127779086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127779086
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127779086
5.6.2.5 RNA 5'-3' helicase
127779086
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127779086
mRNA cycle factors
Common to processing body (P body) and stress granule
127779086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
Helicase_RecD
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
127779086
NCBI-ProteinID:
XP_052161736
UniProt:
I1QAT8
LinkDB
All DBs
Position
7:16440973..16450973
Genome browser
AA seq
1277 aa
AA seq
DB search
MATQTPSSSAAADLYETASQPDPPASAAGDAYTFLEFNTQGDDFDYPDFPELSQPARSAP
PTSAPGVPGSAGSPSPSSSSWPPPPPPPPDASQDPDLAPREATTPPASSSSPSPRASAKA
RASAAAADGLASGVAALSFEEPLGAGAGEDGFGYGKGDFVEHACRYCGIHNPACVARCNV
PSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFI
SAKAENVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQI
SAQQINKVEELWKTNPDASLEDLEKPGVDDEPQQVALKYEDAYQYQNVFAPLIKLEADYD
KMMKESQSKDSLTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDSSHPAWQS
VGHVIKLTAQEEVALELRASQGVPVDLNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVS
GYIYHHLLGHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPISLIQGPPGTGK
TVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEH
LTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCT
CVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAA
RAGLAQSLFERLVILGVKPFRLQVQYRMHPCLSDFPSNCFYEGTLQNGVTVNERQTPGID
FPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPY
EGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDP
RRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKP
KKIYNDRRLFLGGGQGVMQGASFGAAGTNPVADKRSGRGKGHSFVPFGPPNGAHKPGVHP
SGYPLPRMPFPPFAGAHSQPYAIPTRGSLHGPIGAVPPVPQPGNRNFGPRGNTGGPIGGH
LAHQQSSQQAMGGMGSAFNFPGLENPSSQPSGGGPMSQTGLMTQMPVQGLSQTFRDGFSI
GGMSQDFFGDDFKSQGSHVAYNIADFSTQASQGGYGVDYSQGPQSGYPGNYLNQNAHPGY
SHMGAANDIVSQDHMAHGSHGMFTQAGYNDPSQDESSQMHFGMAGPGLQSQPMMNPLYSQ
SYAHYNTQPQSLQPPPQ
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagacgccctcctcctccgccgccgccgacctctacgagacggcctcgcag
cccgacccgcccgcctcggccgccggcgacgcctacaccttcctcgagttcaacacccag
ggcgacgacttcgactacccggacttcccggagctctcccagccggcccgatccgcgccc
cccacgtcggctccgggggtgcctggctccgcgggctcgccgtcgccgtcgtcctcgtcg
tggccgcccccgcctcccccgccgccggacgcctcgcaggaccccgatctcgcgccgcgg
gaggccaccaccccgccggcctcctcgtcctcgccgtcgccgcgcgcgtcggccaaggcg
agggcgtccgccgcggcggcggacgggctcgcctccggggtcgcggcgctcagcttcgag
gagccgctcggcgccggcgccggggaggatgggttcggctacggcaagggcgacttcgtc
gagcacgcgtgccggtactgcgggatccacaaccccgcgtgcgtcgcgcgctgcaacgtg
ccgtcctgccgcaagtggttctgcaactcgcgggggaacacgtccggctcccacatcgtt
aaccacctggttagagcaaaacataaggaagtttgcctacacaaggatagtccgttgggt
gaaacaattcttgagtgctacaattgtggttgtcggaacgtattccttcttggttttatc
tcagcaaaggcagagaatgtcgttgttcttctgtgcagagagccctgtttgagtgttaat
gcattgaaggatatgaattgggacctcagtcagtggtgtcctcttattgatgacaggtgt
ttcttatcatggcttgtcaaggttccctcagaacaggagcagctgagggctcgtcaaatt
agtgcgcaacaaattaacaaagtggaagagctctggaaaacaaaccctgatgcctctctt
gaagatcttgaaaaaccaggtgtcgatgatgagccccaacaagtggctctgaagtatgaa
gatgcttaccagtatcaaaatgtgtttgctccactgataaagcttgaggctgattatgac
aagatgatgaaagagtcacagagcaaggacagcttgaccgtgcggtgggatattggactg
aacaagaagcgcatagcctatttcgtgtttccaaaggaagacaatgaattgagacttgtc
ccaggagatgagctgcggcttcgatattctggtgattcttcacaccctgcatggcagtct
gtgggtcatgtgattaaacttacggcacaagaggaggtagcacttgaacttcgtgctagt
cagggagttcctgttgatttgaaccatggattcagtgtggattttgtctggaagagtact
agctttgataggatgcagggggcaatgaaaacttttgctgtggatgagacaagtgtcagt
gggtacatataccatcaccttttgggacatgaagttgagcatcaaataatacgtaataca
ctaccgagacgctttggtgcaccaggacttccagaactaaatgcttcacaggtcttagca
gttaaaagtgttctccagaagccaattagtttgattcaaggtccacctggcacagggaaa
actgtcacatctgctgcgatcgtgtatcacatggcaaaacaaggccaaggacaggtcctt
gtatgtgctccaagtaatgtagccgttgatcagttggcagagaagataagctctactggt
ctcaaggttgtcaggctatgtgcaaaatctagggaagctgtttcatctcctgttgagcat
ttgacacttcattatcaggttcggcaccttgatacatctgaaaagagtgaattgcataag
ctacagcaactcaaagatgaacaaggtgaattgtcaagcagtgatgagaaaaagtacaag
gcattaaaacgagctactgagagagagatattacaaagtgctgatgtgatttgttgcact
tgtgttggtgctggagaccctcgtttagcaaacttccgattccgtcaagttcttattgat
gaatctacacaggcaacagagcctgaatgtctcattccattggtgcttggtgtaaagcag
gttgttcttgttggagatcattgtcaactgggcccagtcatcatgtgcaaaaaggcagct
cgtgcaggattagcacaatcgctctttgaacggcttgttatccttggagtcaagcctttc
aggctacaggtacaatataggatgcacccttgtctttcagacttcccgtccaactgcttc
tatgaaggcacactgcaaaatggagtaactgtaaacgagagacagacacctgggattgat
tttccttggcctgttccaaatcggcctatgttcttctacgtgcagatgggacaagaagag
atcagtgccagtgggacatcatacctcaatagaactgaagctgcaaatgttgaaaagatt
gtaactacatttttaaggagtggtgttgtaccaagccagattggagttatcacaccttat
gaaggacaaagggcatatattgtgaattatatgtcaaggaatggctctcttcgccaacaa
ctatacaaagaaattgaggtagcaagtgttgattccttccagggaagagaaaaagattac
ataatcctgtcttgtgttagaagcaatgagcaccagggtattgggtttcttaatgatcca
cgcaggttaaatgtcgcattaactcgtgctcggtacggtatagttattcttgggaaccct
aaagttctaagcaagcagccactctggaatagtttattgacacattataaggagcatgag
tgtttggtagaaggacctttgaacaacttaaagcagagtatggtgcaatttcaaaagcca
aaaaagatctacaatgatcgacgactcttcctgggtggcggtcaaggtgttatgcaagga
gctagttttggtgctgcaggcacaaacccagtggcagataagagaagtggtagggggaaa
gggcattcctttgttccatttggcccaccaaatggggctcataaacctggtgtgcaccca
tctggctatcctttacctcgtatgcctttccctccatttgctggggctcattctcaaccc
tatgctattccaacccggggatcattgcacggaccgattggagctgttccacctgtgcct
caacctggaaacagaaactttggacctcgtggaaatactggtggccctattggtgggcac
cttgctcaccaacagagttctcagcaagctatgggaggcatggggtcagcttttaacttt
cctggcctggagaatccgagcagtcagccttctggtggaggtccaatgtcccagactgga
ttgatgacacagatgcctgtccaaggtctcagtcaaacattccgcgatgggttttccatt
ggtgggatgtctcaggacttctttggagatgatttcaagagccaaggatctcatgtggca
tacaacattgctgatttttccactcaggcttctcaaggaggctatggtgttgactactct
caaggaccccaatctggatatcctgggaattatttgaaccaaaatgcacacccagggtat
tcccatatgggtgcagcaaatgacattgtctctcaggatcacatggcccatggttcacat
ggaatgtttacacaagcgggatacaatgacccttcacaagatgagtcatcacagatgcat
tttggaatggctggtcctggtcttcagtctcagcccatgatgaacccgctctactctcag
tcatatgctcattacaacacccaaccgcagtctctccaacctcctccccagtga
DBGET
integrated database retrieval system
