Oryza glaberrima (African rice): 127779185
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Entry
127779185 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127779185
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127779185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127779185
03041 Spliceosome [BR:
ogl03041
]
127779185
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127779185
Spliceosome [BR:
ogl03041
]
Complex B
Other components
Prp19-related factors
127779185
Complex C
127779185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_19
TPR_2
TPR_15
TPR_16
TPR_12
TPR_8
ARM_TT21
ARM_TT21_C
TPR_5
HTH_psq
Motif
Other DBs
NCBI-GeneID:
127779185
NCBI-ProteinID:
XP_052161866
UniProt:
I1QCN4
LinkDB
All DBs
Position
7:complement(23987459..23992378)
Genome browser
AA seq
931 aa
AA seq
DB search
MPSPAGGPVAVAAASAAAAPALGISPDMYPTEDDLAYEEEILREPFKLKGWWRYLVARAA
APFAKRAVIYERALKALPGSYKLWHAYLRERLDHARPHPISHHAYASLNNTFERALATMH
KMPRVWVLYLTSLLDQRLLTRARRAFDRALRALPVTQHDRIWPLYLRLASLPACPVETSL
RVFRRYLQYDPSHAEDFIDFLISANRWQEAADRLASVLNDDGFRSVKGKTRHQLWLELCE
ILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGVASV
MTVQEFSVVFEAYTQFEQSMLAAKLEAAEEEGAGSEGEEEAGRKNGMDKLSKKFLADCWL
NDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPTRQVATYVEA
VKTVDPMKAAGKPHTLWVAFAKMYEKHNRLDSAEEIFKKATQVNYKAVDHLASIWCEWAE
MELRHNNFDKAIELMRQATAEPSVEVKRRAAAEGDEPVQLKVHKSLKLWSFYVDLEESLG
TLESTRAVYERILDLRIATPQIVLNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV
TYLTKFVRRYQRSKLERARELFDEAVKQAPPQEKKVLYLQYAKLEEDYGLAKRAMNVYDE
AVRAVPNSEKMSMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVMTMCMKFAELERN
LGEIDRARAIYVHASNYADPNSHPEFWNKWNEFEIQHGNEDTFREMLRIKRTVAASRSQT
HFILPEYLMQRDQRLNLDEAVDTLKRAGVPEDEMANLERQLAPGPSTAPPAPSTATAPVN
RMMNFVSAGVQAQAESSSRQQQAAAANNEDIELPDESDEEEDGVQIAEKSVPAAVFGELG
KRAAENREEESSGAQENEQLGALERIKRRRQ
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgcctgcggggggtccggtggccgtggcggcggcgtctgcggcggcggcgccg
gcgctggggatctcgccggatatgtacccgacggaggacgacctggcgtacgaggaggag
atcctgcgcgagccgttcaagctcaaggggtggtggcgctacctcgtcgcccgcgccgcc
gcgccgttcgccaagcgcgccgtcatctacgagcgcgcgctcaaggcgctcccggggagc
tacaagctgtggcacgcctacctccgcgagcgcctcgaccacgcccgcccgcaccccatc
tcccaccacgcctacgcctccctcaacaacaccttcgagcgcgccctcgccaccatgcac
aagatgccccgcgtctgggtgctctacctcacctcgctgctcgaccagcgcctgctcacg
cgcgcgcgccgcgccttcgaccgcgcgctgcgcgcgctccccgtcacgcagcacgaccgc
atctggccgctctacctccgcctcgcctcgctcccggcctgccccgtcgagacctcgctc
cgcgtcttccgccgatacctccagtacgacccctcccacgccgaggacttcatcgatttc
ctcatctcggcaaaccgctggcaggaggccgccgaccgcctcgcgtccgtgctcaacgat
gatggcttccgctccgtcaagggtaagacccggcaccagctctggctcgagctatgcgaa
atcctcaccaagcatgccgatgaggttgcggggctcaaggtggacgctatactgcggggc
ggcatacgcaagttcaccgatgaggttggcaagctgtggacctccctggccgattactat
gtcagaagaaccttgtatgagaaggcgagggatgtcttcgaggagggggttgcttcggtg
atgacggtgcaggagttcagcgtggtgtttgaggcgtacacacaattcgagcagagtatg
cttgcggcgaagctggaggcagccgaggaggagggtgcagggagtgaaggggaagaggaa
gcgggcaggaagaatgggatggacaagctgtcgaagaaattcctcgcagattgctggctg
aatgatgaggatgatactgatttgaggctggcaaggtttgagcggctgttggatcgccgg
ccagagctcctcagcagtgtcctgttgcgacagaatccacataatgtggaggaatggcac
aggagggtgaaactttttgagaaggatcctacaaggcaagtagccacatatgttgaagct
gtgaaaaccgtagaccctatgaaggcagctggaaaaccacatactctatgggtggcattc
gcaaagatgtatgagaaacataatcgtctagatagtgctgaagagatctttaaaaaagca
acacaggtgaactacaaggcagttgaccacttagccagtatttggtgtgagtgggcagag
atggagctgaggcacaataattttgacaaggctattgagctgatgaggcaagctactgca
gaaccctctgttgaggttaagaggcgagctgctgctgagggggatgaacctgtccaattg
aaagtacataaatctctgaaactgtggagcttctatgtggacctggaggaaagtcttgga
acattggaatcaactcgtgcagtttatgagagaatattggatttacgaattgccactccc
caaatagttctcaattatgcatatcttcttgaggaaaacaagtattttgaagatgcgttt
aaagtgtatgagcgtggtgtgaaaatttttaaatatccccatgttaaagacatttgggtg
acctacctcacaaagtttgtaagaaggtatcagagaagcaagttagagcgggcaagagaa
ctgttcgatgaagctgtcaaacaggctcctccacaagaaaagaaggtgttgtatttgcag
tatgctaagctggaggaagactatggccttgcaaaacgtgcaatgaatgtatacgacgaa
gctgtaagggctgttcctaacagcgaaaagatgagtatgtacgaaatatatattgcacgg
gctgcggagctatttggtgttccaagaacaagacagatatatgagcaagcaattgaatct
ggactcccagacagagatgtcatgacaatgtgcatgaaatttgcagaacttgaaagaaac
cttggagaaattgatcgtgcccgtgccatttatgtccacgcatccaactatgccgatcca
aactctcatcctgaattttggaataaatggaatgaatttgagattcagcatggtaacgaa
gatacattcagggagatgcttcgcatcaagcgaactgtggctgctagccgcagtcagact
catttcatactcccggagtacttgatgcagagggaccagaggctgaacctcgatgaggca
gttgacactctgaaacgagccggtgttcctgaggatgagatggctaacctagaaaggcaa
ctagcgccaggaccttccacggctccaccagctccaagcactgctactgctcctgttaac
cggatgatgaactttgtcagtgctggagtgcaggcacaggctgagagcagcagcaggcaa
caacaggctgctgctgctaacaatgaggacattgagctgcccgatgagagcgacgaggag
gaagacggtgtccaaattgcggagaagagtgttcccgctgcggtgtttggagagctcggc
aagagagctgcagagaacagggaggaggaaagctctggtgcccaggagaatgagcagctt
ggcgcccttgagaggatcaagcgaaggcgtcaatga
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