Oryza glaberrima (African rice): 127779302
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Entry
127779302 CDS
T08853
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127779302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127779302
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127779302
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127779302
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
127779302
NCBI-ProteinID:
XP_052161991
LinkDB
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Position
7:complement(3946665..3947762)
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AA seq
339 aa
AA seq
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MPGAPDVGSYYGEQWAPPAMSSLSSLFSYSPPGTAKYAAALASPSQQVSTTMPELETEGE
LKTLPAPMTIETTAAAAAAARSPEIVKVRSVWAHNLDEEANLIESLFPSFRLAAVDTEFP
GTVHRPSAPAYTLTRKQKYALLKKNVDELHLVQLGLTLFDAGGRLPDLGTGGAARYVWEF
NFREFDLRRHAHAPESIALLRSKGVDFDRTRRGGVDAAAFGPRLRRWLRAGLGRAGLVTF
SGTYDLAYMLKMLYGRTLYDVGKMARHCPGDMRGGLERVAGKLGVRRAVGEAHQAGSDSL
LTSQMFMRMRERYFDDQDALTAVAGINFGYLNFTSCEYT
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgccgggggcgccggacgtcggcagttactacggcgagcagtgggcgccgccggcgatg
tcgtcgctgtcgtcgctgttctcctactcaccgccggggacggccaagtacgcggcggcg
ctggcgtcgccgtcgcagcaggtgtccacgacgatgccggagctggagacggagggggag
ctgaagaccctgccggcgccgatgacaatcgagacgacggcggcggcggcggcggcggct
cggtcgccggagatcgtcaaggtgcggtcggtgtgggcgcacaacctcgacgaggaggcc
aacctgatcgagtcgctgttcccgagcttccggctcgccgccgtcgacaccgagttcccc
ggcacggtgcaccggccgtcggcgccggcgtacacgctgacgcgcaagcagaagtacgcg
ctcctcaagaagaacgtcgacgagctccacctagtccagctcggcctgacgctgttcgac
gccggcggccggctgccggacctcggcaccggcggcgccgcgcgctacgtgtgggagttc
aacttccgggagttcgacctccggcgacacgcgcacgcgccggagtcgatcgcgctgctg
cgttccaagggcgtcgacttcgaccggacgcggcggggcggcgtcgacgcggcggcgttc
ggcccgcggctgcgcaggtggctgcgcgccggcctcggccgcgccgggctcgtcacgttc
agcggcacctacgacctcgcctacatgctcaagatgctctacgggaggacgctgtacgac
gtgggcaagatggcgcggcactgccccggcgacatgcgcggcgggctggagcgcgtcgcc
gggaagctcggcgtgcggcgcgccgtcggcgaggcgcaccaggccggctccgacagcctg
ctgacgtcgcagatgttcatgcggatgagggaacgctacttcgacgaccaagacgcgctc
acggccgtcgccggcattaattttggatatttaaactttacctcctgtgaatatacttag
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