Oryza glaberrima (African rice): 127779371
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Entry
127779371 CDS
T08853
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
ogl
Oryza glaberrima (African rice)
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogl03041
]
127779371
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127779371
Spliceosome [BR:
ogl03041
]
Complex C
Other components
Complex C specific factors
127779371
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
HA2_N
DEAD
AAA_30
AAA_19
AAA_29
AAA_7
T2SSE
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127779371
NCBI-ProteinID:
XP_052162068
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All DBs
Position
1:5500083..5519741
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AA seq
700 aa
AA seq
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MSRFWRPGSEKPTAAIVEDEEGGVLFLPTSTSSSSSSGFGYASLERQRQRLPVYKYRKAI
LYLVERHATTIVVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQSVASRVAEE
VGVRLGEEVGYTIRFEDQTNPGMTMIKFLTDGVLIREMMEDPLLTKYSVIMVDEAHERSI
STDMLLGLLKKIQRRRPDLRLIISSATIEARSMSTFFNIRRKNSMLESADHLPNPEPAIL
SVEGKGYTVEIHYVEEPVSDYLQAAVNTVLIIHEKEPPGDILVFLTGQDDIDAAVKMLNE
EIQHRGRHYLDLLILPLYSGLPRGDQDLIFTPTSKGKRKVVISTNIAETSLTLEGVVYVV
DSGFSRQKCYNPISDIESLVVAPISKASARQRAGRAGRVRPGKCFRLYTEEFYLKEMQPE
GIPEMQRSNLVSCIIQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGILDEDAKLTV
PLGFQVAEIPLDPMISKMILSANNFGCSDEILTIAAFLSVQSVWVSMRGVKKEFDEAKLR
FAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNHQALKKVIDIREQLVRIIKRFGIPLT
SCDRDMEAVRKAIIAGAFANACHLEEYSQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVIY
QSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPALH
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggttctggaggccggggtcggagaagccgacggcggcgatcgtcgaggacgag
gagggcggcgtcctcttcctgcccacaagcaccagctcctcctcctcatccgggtttggg
tacgcgagcttggagcggcagcggcagcggctgccggtgtacaagtaccggaaggccatc
ctctacctggtggagcggcacgccacgaccatcgtcgtcggcgagaccggcagcggaaag
tccacgcagatccctcagtaccttaaagaggctggatgggccgagggtggtcgacttata
ggctgcactcaaccaagacgattggctgtgcagtcagttgcatcaagagtagcggaagaa
gtaggtgtgagactcggagaagaagttggttacacaatccgatttgaggatcaaacaaat
ccaggtatgaccatgattaaatttctgacagatggggtattgatcagagaaatgatggaa
gatcctcttctgaccaagtatagtgtaattatggttgatgaagcccatgaacgatccatt
tcaactgacatgttgctgggtcttctgaaaaagattcaacgacgtcggcccgacttgcgt
ctaatcatatcctctgcaacaattgaagcaagatccatgtcaacttttttcaacattagg
cgaaagaattctatgcttgagtctgctgatcatttgcccaacccagaacctgctattctt
tctgtggaaggtaaaggttacacagtggaaatccattatgttgaagaacctgtttcagac
tacttacaggctgctgtgaatactgtacttattattcacgaaaaggaaccaccaggggat
attttggtatttttaactggccaggatgacatagacgcagctgttaagatgctaaatgaa
gaaattcaacaccgtggaagacattatttagacctgctgattctgcccttgtactctggc
cttccgcggggagatcaagacctcatttttactccaacttcaaaagggaaaaggaaggtt
gtgatatcaacaaacattgctgagacgtcattaactctagagggcgtggtgtatgttgtt
gatagtgggttttccaggcagaagtgttacaatccgatttctgatatcgagagtttagtt
gtcgcaccaatatccaaggcatccgcaagacaaagagcaggccgagctggaagggtgcga
ccaggaaagtgctttaggctttatacagaggaattttaccttaaagaaatgcagccagaa
gggattcctgaaatgcaaaggtctaaccttgtttcctgcataatacagttgaaagctcta
ggaatagacaacattttgggatttgattggccagcttctccatcacctgaggcaatgatt
cgagctcttgaagttctatattccctgggaatccttgatgaagatgccaaactaacagta
ccccttggcttccaagttgctgagatccctctggaccctatgatttcaaaaatgatcctt
tcagccaataatttcggatgctctgatgagatattgaccatagcagcatttctatctgtt
caatctgtgtgggtttccatgagaggagtgaaaaaagagtttgatgaagctaagctccgt
tttgctgctgctgagggagatcatgtgacgttcctgaatatctacaaaggatttcatcaa
tctggaaaatctagtcagtggtgttacaagaactttttgaaccaccaagcattgaagaag
gttattgacatcagggagcagcttgtcaggattatcaagaggtttggcataccactaaca
tcatgtgatagagatatggaggcagtaagaaaagctattattgctggtgcatttgctaat
gcatgccatctagaggaatacagccagaatgggatgtacaaaacaataaggacctcacaa
gaagtttatattcatccttcttctgtgctatttagggttaatccaaagtgggtcatctac
cagtctctagtttcaactgataagcactatatgcgtaatgttattgccattgaaccatca
tggcttacggaagctgcaccacatttttatcagttccggacacccaatcctgcccttcac
taa
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