Oryza glaberrima (African rice): 127779692
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Entry
127779692 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127779692 isoform X1
KO
K06100
symplekin
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127779692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127779692
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127779692
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127779692
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127779692
U7-dependent histone pre-mRNA processing factors
127779692
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
HEAT
Motif
Other DBs
NCBI-GeneID:
127779692
NCBI-ProteinID:
XP_052162520
UniProt:
I1QDI6
LinkDB
All DBs
Position
7:26460877..26472166
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AA seq
1245 aa
AA seq
DB search
MAVAAARDLPPTFHPNPSPLPSSMEPRLRQLRRVPLLDFVARIADLHADQASPVRKLVAE
MIGEVGSKHMAYLPNVMPCLLHLLNDDTPAVARQAIKTGTTLFAKVLRQLVIQGLFSSGG
IDDSLKLSWEALLKLKSAVSHMAFQPMSNEGARLLAIKFVEKTVLLYTPDPDTPPDPPNE
VTEDMGFNVAWLRGGHPLLNVGDLAMEASQNLGLLLEQLKPPKVKSLSTSMIIVFVTSLS
AIAQRRPSFYGRILPVLLSLDPASSIIKVQVPGAFHALKSAFAACLKCTHSSAEPWRARL
LEAQNIINQADSIEHSSNRVESLPLETTSTDNSNKRNLIDDIDNVPEDGDRSNKRIRQSH
HDQERTENVKNNVELTSADTPSSPSNSASTGNSEAVYQLVSMFAALAAQGDRAAGSLQIL
SSSIAADLLAEVVMVNMQHLPVSHPEVDQQQSPSAGQPSGAPSSSLLSACFPLLESLLKR
INQNDREVDEAPQTIDSAVVPSAAGETAAIPAIPGPTSRNLPMEENSNSSSIPSDMETIE
AKEPTADAARLSIEIQESSEASHASTELQGTQEHGGSFISSLPADNSSAGLSLAQSSETR
SPSSSMVEASQTQFSYSSTLTSQHVLPKLVVTNIDLSDEAKDLLQKEAFLRILDCDKQDA
SGGSIARLPLLAHLGVEFPLELDPWELLQKHVLSDYVNNEGHELTLCILNRLYREAEQDH
DFLSSRTATSVYESFLLTVAENLRDMFPASDKSLGKLLCEIPYLPEGVLKLLEGLCSPGS
NEKQDKDLQSGDRVTQGLSAVWNLIMLRPSNRDRCLEIALQSSIHHLDEVRMKAIRLVAN
KLFPMASISKRIEDFANEKLNSVLEVVPADESAASEMSTPEAPKDGGSENLSSSVADSQT
LMSLYFALCTKKHSLLRHVFAIYGSLPQAAKQAVHRQVPILIRTIGSSPSLLGIISDPPA
DSRDLLMQVLQTLTDGAMPSQDLISSVKNLYSKTKDIEVLFAVLAHLPKDEVLPVFPSIV
NLPLDKFQVALSRILQGSPQNGPSLDPSEILIAIHVIDPEKEGIPLKKVIDACAACFEQR
TIFTQQVLAKALNQLVEQIPLPLLFMRTVMQAIGAFPALVDFVMDIMSRLVSKQIWKYPK
LWVGFLKCAILTKPQSYGVLLQLPAPQLENALNKNPVLKAPLVEHANQPNVRSTLPRSTL
VVLGLAEDQQQPAPQAQSSQNQAAETSSSAADTTTEVTQESSAVS
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggccgctgcccgagacctcccgccgaccttccatcccaacccctcgcctttg
ccttcctccatggagccgcgcctccgccagctccgcagggttccgctcctcgacttcgtc
gcccgcatcgccgacctccatgccgatcaggccagccccgtccgcaagctcgtcgccgag
atgattggtgaggttgggtcaaaacacatggcataccttcccaatgtcatgccttgtctg
cttcatcttctcaacgatgacacacctgcggtcgcaaggcaagctattaaaacaggaaca
accttgtttgccaaagtactacgacagctagttattcagggcttgttctcaagtggtggc
attgatgattcattaaaattatcctgggaggcactgctcaagcttaaatctgctgtgtca
cacatggcctttcagccgatgagcaatgaaggagccaggttactggctattaaatttgtt
gaaaaaacagttctattgtacacccctgatcctgataccccaccggatccaccaaatgaa
gttacagaagatatgggattcaatgtagcatggctgagaggaggtcaccctttgcttaat
gttggagatctggcaatggaagccagccagaaccttggattgctgctagaacagcttaag
cctcctaaagtaaaatcactcagtacttccatgatcattgtctttgttactagcctctca
gctatcgcgcaaagaagaccttcattttacggacgcatacttccagttttactttctttg
gatccagcaagttccattattaaagtgcaagtcccaggtgctttccatgctttgaagagt
gcctttgctgcatgcctgaaatgtacacattcaagtgcagagccgtggcgagctcgccta
ttggaagctcaaaatattatcaaccaggctgattcgatagaacattcttcaaacagggta
gaatcattgcctctggagacaacaagcacagataacagtaacaagcgtaatctgatcgat
gacatcgataatgtgccagaagatggtgatcgttccaacaaaagaattaggcaatcacat
catgatcaagaacgtactgaaaatgtaaagaataatgtggagctaacctctgctgatacc
ccatctagcccgtccaactctgcaagtactggaaattctgaagctgtatatcaattagtt
agtatgtttgctgcattagccgctcaaggtgacagagcggctggatcactgcaaatcctg
tcatccagtattgctgctgacttattagcagaggtggtaatggttaacatgcaacacctg
ccagtttctcatcctgaagtagaccaacaacaatctccttcagctggccagccatctggt
gctccgagttcaagtcttctttcagcatgctttcctctgttagaatctttattgaagaga
ataaatcaaaatgatcgagaggtcgatgaagcacctcaaactatagattctgctgttgtg
ccatctgctgctggtgaaactgcagcaattcctgccattcctggacctacctcaagaaat
ctacctatggaggagaatagtaatagttcatcaattccatctgatatggaaactatagag
gctaaagaacccactgcagatgccgctaggttatcaattgagattcaagaatcatcagaa
gcttcccatgcttcaacagaacttcaaggaacccaagagcatggtggcagttttattagt
tcattgcctgctgataattcctcagctggtcttagtttggctcaatcttcagaaactcgt
agtccaagctcttctatggtggaagcaagtcagactcagttctcatattcaagcacactt
acttcacagcatgtgcttccaaagttggttgtgactaatattgatctcagcgatgaggct
aaagatctacttcaaaaagaagcatttttgcggattcttgattgtgataaacaagatgca
tctggtggttcaatagctcgtcttcccttgcttgctcacttgggtgttgagttccctttg
gagttggacccttgggagcttctccagaagcatgtactgtctgattatgtaaataatgag
ggacacgagctgacactgtgcattctgaacaggttgtatcgtgaagcagaacaggatcat
gacttcctttcatcgagaactgcaacatcagtttatgaatcgtttcttctgactgttgct
gaaaatcttcgcgatatgtttccggcttcagataaatcacttggaaaattactttgtgag
ataccatacttaccagagggtgtattgaagttgctagagggcttatgttctcctggaagc
aatgagaagcaggacaaggatctgcagagtggtgatagggtaactcaaggacttagtgct
gtctggaaccttatcatgttaagaccttcaaatcgagacagatgtctggagatcgctttg
cagagttcaatccatcatctagatgaggtccgcatgaaggcaatacgcttggtagcaaat
aagctatttcctatggcaagcatttcaaaaaggattgaagattttgcaaatgaaaaactt
aattcagttctggaagtagttccagctgatgaatcagcagcttctgaaatgtctactcca
gaagcacccaaggatggtggttcagaaaatttatcgtcttcagtagcagattctcaaact
ttgatgtcactctattttgctttgtgcaccaagaagcattcccttcttcggcatgtattt
gcaatatatggaagtctaccacaagctgccaagcaggcagttcatcgacaagtacccatt
ctgatccgcacaataggctcatctcccagtcttcttgggatcatctcagacccaccagct
gatagtcgggacctactgatgcaggttttacagacactcaccgatggagcaatgccatct
caagatctgatttcctctgtaaagaacttatattctaaaacaaaggatatcgaggtcctt
tttgcagtcttggctcatctgccaaaagatgaggtcctccctgtttttcccagtattgtt
aatcttcccttggataagtttcaagttgcactttctcgaatcctgcagggatcaccgcag
aatgggccttctcttgatccatcagaaattttgattgcgattcatgtaatagatcctgag
aaagaaggaataccactcaaaaaggttattgatgcctgtgctgcttgttttgagcaaagg
acaatattcactcaacaagttttggcgaaagcactgaaccaactggttgaacaaattcca
cttccgttgctgtttatgcgaactgttatgcaagcaatcggtgcatttcctgcattggtg
gactttgtgatggatatcatgtcacgtcttgttagcaagcagatatggaagtatcccaag
ttatgggtaggattcctgaagtgtgctatcttgacgaaacctcagtcatatggtgtgctg
ctgcagttaccagctcctcaacttgaaaatgccttgaataagaatcctgtactgaaggca
cctttggttgagcacgcgaaccaacctaacgtacgatcaactcttccaaggtctaccttg
gtagttttgggtcttgctgaagatcaacagcaacctgcacctcaagcacaaagtagccaa
aatcaggctgcagaaaccagcagttcagctgcagatactacgacagaagtgacccaggaa
tcttccgctgttagctaa
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integrated database retrieval system
