Oryza glaberrima (African rice): 127780027
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Entry
127780027 CDS
T08853
Name
(RefSeq) squalene synthase 8-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl00100
Steroid biosynthesis
ogl00909
Sesquiterpenoid and triterpenoid biosynthesis
ogl01100
Metabolic pathways
ogl01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
127780027
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
127780027
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ogl01006
]
127780027
Enzymes [BR:
ogl01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
127780027
Prenyltransferases [BR:
ogl01006
]
Terpene biosynthesis
Squalene/phytoene synthase
127780027
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
127780027
NCBI-ProteinID:
XP_052162945
UniProt:
I1Q8V6
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Position
7:5474740..5480320
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AA seq
410 aa
AA seq
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MGVVGALLGPEAEALVRLRAAAWRLRREVAAATDDDEHWAFAYSMLHRVSRSFAIVIQQL
GPDLRNAVCVFYLVLRALDTVEDDTSIPTEIKVPILQEFHRHIYNRDWHFSCGTKDCKIL
MDKFHYVLTAFLELGSGYQEAIEEITRRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGI
GLSRLFHAAGLEDLAPEPLSNSMGLFLQKVNITRDYLEDINEIPKSRMFWPREIWSKYVD
KLEDLKYENNSVKAVKCLNEMVTNGLIHTEDCLRYMSALKDITILRFCAIPQVMALATYA
LCYNNVNVFRGVVKLRRGLTARIINETNSMADVYTAFYEFSSLLAEKIDDNDPNASLTRK
RVNAIKETCKSSGLLKIRGYDLDRPKRNPAMIMMLLLLLVAIFLGALYRR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgggggtggtgggggcgttgctgggaccggaggcggaggcgctggtgaggctgcgggcg
gcggcgtggcggctgcggagggaggtcgccgccgccaccgacgacgacgagcactgggcc
ttcgcctactccatgctgcaccgcgtctcccgcagcttcgccatcgtcatccagcagctc
ggccccgacctccgcaatgccgtgtgcgtcttctacctcgtgcttcgggcgctcgacacc
gtcgaagatgatactagcatccctactgagattaaggtgcccatccttcaggaattccac
cgtcatatctataaccgggattggcatttctcatgtggaacaaaggactgcaagattctg
atggataaattccactatgttttgacagctttcttggagcttggttcaggataccaagag
gcaattgaagaaattaccaggagaatgggtgcaggaatggcaaagtttatatgcaaggag
gttgaaactgttgatgattatgatgagtactgtcactatgtggcagggctagtcggcatt
ggactttcaaggctctttcatgctgctgggttagaagatcttgctcccgaaccgctttct
aattcaatgggtttatttttgcagaaagtcaatattactcgggattacctggaggacata
aatgagataccaaaatcacgcatgttctggccacgagaaatatggagtaaatatgttgac
aaacttgaggatctcaaatacgaaaataattcagtgaaggcagtaaaatgcttgaatgag
atggtgactaatggtttaatacatactgaagattgccttcggtatatgtctgctctaaag
gatattactattctccgtttttgtgcaataccccaggtaatggcacttgcaacctatgct
ctgtgctataacaatgtgaatgtatttcgaggagttgtgaagttgaggcgtgggctgact
gcacgaataatcaatgaaacaaattctatggctgatgtgtacactgctttctatgaattc
tcttcactgcttgcagaaaagattgatgataatgatccaaatgcgtcgcttacacggaaa
cgtgtgaatgcaataaaggagacctgcaaatcatccggtttgctgaagataaggggatat
gacttggataggccaaaaaggaaccctgctatgatcatgatgctactgctgctcttggta
gctattttcttgggagctctgtataggaggtga
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