Oryza glaberrima (African rice): 127780809
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Entry
127780809 CDS
T08853
Name
(RefSeq) nuclear pore complex protein NUP54
KO
K14308
nuclear pore complex protein Nup54
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127780809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127780809
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127780809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
CTD
HD_5
Motif
Other DBs
NCBI-GeneID:
127780809
NCBI-ProteinID:
XP_052163742
LinkDB
All DBs
Position
7:10813873..10819739
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AA seq
410 aa
AA seq
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MFGTPSSSPLFGTPSTTPAFGAPSSTPAFGTPSTTPAFGTPSSTPAFGAPSSTPSFGTPS
TAPAFGTPSSTPAFGAPSSTPAFGAPSSTPAFGTPSSTPAFGVAPSPSPSPFGFQQQMTP
SPSPFGFAGGGGGQITTQMAPVAPLPLSPSDRDIQAIVDAYKEDPGNPRYAFRHLLFSVT
EPSQRVKPVAASDIMWAEAMGKLEGMDSSDRERLWPQLVQGFKDLSYRLKLQDGVLVSDS
DRLSMTRDNVKKLQRHFQADTYPWIQRLKQQELVIERRLLRIMRIVEALENRGYRIPLTK
EEADLYERLAVIAKQLKGPTGDLHKRVYNLLSTSRLLASAGGTAGPIYIPSSTKVDEQSV
AELLEALQQQTEAVAKLGNVMKRDTRDLEIILSEDTDMAEDSVGRRALKM
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgttcggcaccccgtcttcgtcgcccctatttgggaccccctccaccaccccggcattc
ggcgccccttcctccacccctgcattcggcacgccctccaccacccccgccttcggcacc
ccttcctccacgccggcgttcggcgcgccgtcgtccaccccgtccttcggcaccccctcc
accgcgcccgcgttcgggaccccgtcctcgaccccggctttcggcgcgccctcctcgacc
cctgccttcggggcgccctcgtcgaccccggcgttcgggacgccctcgtcgaccccggcg
ttcggcgtggcgccgtcgccgtcgccatcgccgtttgggttccagcagcagatgacgccg
tccccgtcgccgttcgggttcgccggtgggggcggcggccagatcaccacccagatggcc
cccgtcgcgccgctcccgctctcgccctccgaccgtgacatccaggctatcgtggatgcg
tacaaggaggatcctggaaaccctcgttatgctttcaggcatctgttgtttagtgttaca
gagccttcacaaagggtgaagccagttgcggcatctgatatcatgtgggcagaagctatg
gggaagcttgagggcatggatagttcggatagggagaggctgtggcctcaactcgtgcag
ggatttaaggatctttcctaccggcttaagcttcaagatggagttcttgtctcagattct
gatagattgagcatgacacgcgacaatgttaaaaagttgcaaagacatttccaagctgac
acatacccatggatccaacggctgaagcagcaagagttggttattgagagacgcctctta
aggataatgagaatagtggaggcattagagaatcggggttatcgtattccactaacgaag
gaggaagctgatctgtatgaacgactggctgttatagcaaagcagctaaaaggacccact
ggtgatctgcacaagagagtttataatcttctttcaacttctcgccttcttgctagtgct
ggtggcactgctggtcctatctatattcctagctcaacgaaagttgacgaacagagtgtt
gctgagcttcttgaggccttacaacaacagacggaagctgttgccaagttgggcaatgtg
atgaaaagagatacaagagacttggaaataatactttcggaagatacggacatggcagaa
gacagtgttgggagaagggcattgaagatgtag
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