Oryza glaberrima (African rice): 127781776
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Entry
127781776 CDS
T08853
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127781776
09123 Folding, sorting and degradation
03018 RNA degradation
127781776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127781776
03041 Spliceosome [BR:
ogl03041
]
127781776
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127781776
mRNA cycle factors
Stress granule specific factors
127781776
Spliceosome [BR:
ogl03041
]
Complex C
Other components
Complex C specific factors
127781776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RRM_7
RRM_3
BRAP2
Motif
Other DBs
NCBI-GeneID:
127781776
NCBI-ProteinID:
XP_052164772
UniProt:
I1QHJ4
LinkDB
All DBs
Position
8:11202053..11209442
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AA seq
660 aa
AA seq
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MAAQVQAVPAAEGGGAPPQANGVVAAGSAAAAAATFQATSLYVGDLDVSVQDAQLFDVFS
QVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEMLNFTPINGKPIRIMYSNRDPS
SRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAA
QNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGK
FGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSERE
MELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLKETFADFGTITSCKVMRDLNGV
SKGSGFVAFKSAEDASRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFSQMRPMVMP
PSVAPRMPMYPPGVPGVGQQLFYGQPPPAFVNPQPGFGFQQHLIPGMRPSVGPIPNFVMP
MVQQGQQPQRPAGRRAGTGGIQQPMPMGHQQMLPRGSRGGYRYASGRGMPDNAFRGVGGL
VPSPYEMGRMPLSDAGAPPQVPIGALASALANSPPDQQRLMLGESLYPLVDQLEHDQAAK
VTGMLLEMDQTEVLHLIESPDALKAKVAEAMEVLRNAQQQQANTPTDQLAALTLSDGVVS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcaggttcaggcggtgccggcggcggagggtggtggcgcgccgccgcaggcc
aacggggtcgtggctgcgggctctgctgccgccgctgcggcgaccttccaggcgacgtcg
ctgtacgtgggggacctcgacgtgagcgtgcaggacgcgcagctgttcgacgtcttcagc
caggtcggatcggtggtatcggtgcgcgtttgccgggacgtcaataccaggctgtcgctg
ggttacgcctatgtcaacttcagcagtcccgccgatgctgcaagggcattggaaatgctg
aacttcactcctattaacgggaagcctatcaggataatgtattctaaccgtgaccccagc
tcacgtaaaagtggagcagcaaacatatttattaagaatcttgacaagtcaatagataac
aaagctctctatgacacattttctgtatttgggaatattctttcgtgtaaagtcgcgacg
gaaatgtctggagagtcgaagggatatggttttgttcagtttgagctggaagaagctgcc
cagaatgctatcagtaagctcaatgggatgcttttgaatgacaaaaaggtgtatgtaggg
ccttttgttcgtaaacaggagagggaaaatgtatcaggcaatcccaaatttaacaatgtg
tatgtaaagaacctatcggaatcaacaactgaagataatttaaaggaaatttttggtaaa
tttggacccataactagtgtcgttgtaatgcgtgaaggtgatgggaaatctagatgcttt
ggatttgttaactttgaaaatccagatgatgctgcccgagctgttgaagatttgaatggc
aagaagtttgatgacaaggaatggtatgtttgtagagcacagaagaagtcagagagggag
atggaattgaaagaaaaatttgagaagaacatcaaagaggcagcagataagaaccaggga
actaacttgtatttgaaaaacttggatgatagcatcgatgacgatgagaaattaaaagaa
acttttgctgattttggtactattacctcttgtaaggtcatgcgagatttgaatggtgtt
agtaaaggatctggctttgttgcatttaagtctgctgaagatgcttcacgagctcttgtg
gctatgaatggtaagatggttggcagtaaacctctctatgtagcacttgcacaacgcaag
gaagaaagaagggcaaggcttcaggcacagttctcacaaatgcgtcctatggtgatgcct
ccttcagttgctcctcgtatgcccatgtatccccctggtgtccctggtgtaggccaacag
ctgttttatggccagccacctccagcttttgttaaccctcagcctggatttggcttccag
caacatctcattcctggtatgaggcctagtgttggaccaattccaaattttgtcatgcct
atggtccagcaaggtcaacaaccacaacgtccagctggaaggcgtgcaggcactggtgga
attcagcaaccaatgccaatgggccaccagcaaatgcttccaaggggtagtcgtggtggt
taccgttatgcttctggtcgtggcatgccagacaatgcattccgtggtgttggaggttta
gtgccatccccatatgagatgggaagaatgcctctcagtgatgctggtgcaccaccgcag
gttccaattggagcattggcctctgcactggccaattcacccccagatcagcaaagactg
atgcttggtgaaagtttatacccgcttgttgatcagctggagcatgatcaggcagcgaag
gtcactggcatgcttttggagatggaccagactgaagttctccatctcattgagtcacct
gatgctcttaaggccaaggtcgctgaggctatggaagttctccgtaatgctcagcagcag
caggcaaataccccaactgatcagctagctgctctcaccctgagcgacggcgtcgtttct
taa
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