Oryza glaberrima (African rice): 127782462
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Entry
127782462 CDS
T08853
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03022
Basal transcription factors
ogl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127782462
09124 Replication and repair
03420 Nucleotide excision repair
127782462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127782462
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127782462
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127782462
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127782462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
MRP
Snapin_Pallidin
Motif
Other DBs
NCBI-GeneID:
127782462
NCBI-ProteinID:
XP_052165614
UniProt:
I1QHV3
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Position
8:complement(12832838..12841691)
Genome browser
AA seq
604 aa
AA seq
DB search
MGSMTIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPRSAMKLNVDFRSIKGHKFNKVDG
SKPAPPLLNLSKDSDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVPPENSV
TSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDEANKGS
KQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKKMSEKD
FWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTLDMEAD
AGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRSSDVELTDTKTV
AEAIARSKKEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQ
QANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVALKVLNEL
NEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDHWAAIQELLQHFWSSYPITTSVLYNKV
QRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQKSSKSGNK
PNGF
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggggtccatgacgatcggcgccaagtacaagaccacgctcaaggaccccggcaccacc
ggcgtcctgcgcatgaacgaggataagttcaccttcactccccatgatccacggtcagcg
atgaagctcaatgttgatttccggagcatcaaaggccacaagttcaacaaagtagatggt
agcaaaccagctccaccattactgaatctttcaaaagactctgacaagggtggaggctac
atgtttgagtttgacaatgttactaaccgcgacctatctcgtgactttgtagctaaagtt
ttaggtaagcaacaaggtacgataccgcctaaaccaaatgtgccccctgaaaattcagtt
acttcaactggtgaagaacagcttagtgctgcagaaatgcaacgtcggatgaaattgctg
caagaagatagtgaattgcagaagttacatatgaagtttgttcttggcaatattctgcaa
gaatctgaattttgggcaacaagaaagaatttacttgaggacgaagcaaataaaggatca
aaacaaaggccaggtttcaaaagtgccatgctagctgatgttaggccatcggctgatggt
cggacaaataaggttacttttagtctcactaccgagataattcatcagatatttgcagaa
aagccagctgtgcatcgagcgtttttagattttgttccaaaaaagatgtcagaaaaagat
ttttggacaaaatattttagagctgagtatcttcttaggacaaaaaatactgtggcagca
actgctgaggctgctgaagatgaagagttagccatttttctgaagaatgacgatatacta
gcaaaggaggcaaggttgaagataaaacgagtcgatccaacattagatatggaggcagat
gctggagatgactacatccatcttccggaccatggcattattcgtgatggcagtaaagag
acgattgataatgatggtgaattggccaggagaacactttcgcaggatctgaatcgccat
gctgctgttgtgcttgaaggaagatcttcagacgtggaattaactgatacgaagactgtt
gctgaagcaattgcaaggtccaagaaagaaccaccttcaagttctatttctgatgatacc
aatcatgagaggttggtaaaagtggcccgcatgactgagatagaggatctacaagctcca
cggagcctcccatacgcaccactttgtataaaggatcctcgagaatattttgattcccaa
caagcaaatgctctgagatctttaggtggcaacaatgatggaagacatgctcgtaattgc
aggctgagtacagatgatgcatttgatcatttgttgggccaaatatcttctataaaagtt
aatgggttgaactatccggttattcagtctgatgtggctcttaaggttctgaatgaattg
aatgaaggaatttcacgttcaagaagacttaatcttaagaatcctcaagatagtctgctt
ggtcaaatccctcgacgcacacgagatgaacttatggatcactgggcagctatccaggaa
ttattgcagcatttttggtcatcatatccaataacaacttcagttctttataataaggtt
caaagaattaaggatgcaatgacccagatatatcaaaagttgcaggatataaaggaatca
gcacaacctgatgtgagacacgaaatatctcaactagtaaagcccatgacccaggctttg
gatgctgccttcaaccatgacttggagcagcagcaaaaatcatcgaaatccgggaataag
cccaatgggttttaa
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