Oryza glaberrima (African rice): 127782800
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Entry
127782800 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127782800
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
ogl03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127782800
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
127782800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127782800
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
127782800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
127782800
NCBI-ProteinID:
XP_052166028
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Position
8:complement(21406518..21410516)
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AA seq
603 aa
AA seq
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MEPDGDAAFHRNEAISAVQDVDQYYGDDDDFDDLYNDVNVGDGFLHNSSSSQPPPSQKLP
PPSLPPPPPQKQPPSQQLPPPPQQQQPPPQHSLPPPPPLPQAPPPQQQKVHIPGVAAPAP
NHPPSQPNLPPPAAPAPLPPQQHQIQQGGGDGFHRPGGNYGGGPIVVGNGGPAVVGGDGP
GGTTLFVGELHWWTTDADLEAELIKYGPVKEVRFFDEKASGKSKGYCQVDFYDPAVATAC
KEAMNGHLFNGRPCVVAFASPNSVRRMGEAQVKNQQSMAAQTSSMQPKGGRGGGGAGSPQ
VGGNYGGGRGGGPGGGAGGGGGNWGRGGGGMGRGPAGNMRNRMGGPAGGRGIMGNGGMVA
PPPPMLPPGGMMGQAFDPTGYGAMGRMGAGFGGFPGAPGAGPFPGLMQPFPPVVAPHVNP
AFFGRGGMGAGGVGMWPDPNMGGWGGEEQSSYGDDAASDQQYGEGGSHGKERAERPPDRE
WSGASERRREREKDIPPAQEWPDRKHRDERDMGRERDRDYDRERERDRDRERERDRDRER
DRERDRERERDRHRDDRDRYGDYHRHRDRDSERNEDWDRGRSSGVRSRSREVDHSKRRRM
TPE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggagcccgacggcgacgccgcgttccaccgtaacgaggccatctccgccgtccaggac
gtggaccagtactacggcgacgacgacgacttcgacgacctctacaacgacgtcaacgtc
ggcgacggcttcctccacaactcctcctcctcccagcccccgccttcccagaaactcccg
ccgccgtcgctgccgccgccgccgccacagaagcagccaccgtcccagcagctccctccg
cctccccagcagcagcagccaccgccccagcactcgctgcccccgccgccgccgctcccg
caggcgccgcctccgcagcagcagaaggtgcacatccctggcgtggccgccccggctccg
aatcaccctccatctcagcccaatctcccgccgccggccgccccggcgccgctgccgcct
cagcaacaccagatccagcaaggcggtggcgacggattccaccgcccgggaggcaattat
ggcggtggtcccatcgtggtcgggaacggcgggccagctgttgttgggggtgatggtcct
ggcggcacgacgctgttcgtcggggagctccactggtggacgaccgacgccgatcttgag
gcggagctcatcaagtatgggccggtgaaggaagtgagattctttgatgagaaggcgagt
ggcaagtccaagggttactgccaggttgacttctatgatcctgctgttgccactgcctgc
aaggaggcaatgaacggccacctgttcaatggtcgtccgtgcgttgtggcctttgcctcg
ccgaattccgtccgtcgaatgggcgaggcgcaggttaagaaccagcaatccatggctgca
cagacatcgtctatgcagcccaagggtgggagaggcggcggcggtgctggaagccctcag
gttggtggtaattatggtggtggccgcggaggtggacctggtggtggtgcaggcggaggt
ggcggaaattgggggagaggtggtggagggatggggagaggacctgctgggaatatgagg
aatcggatgggaggaccagcaggcggccgagggatcatgggaaatggtggaatggttgca
ccaccacctccaatgctgcctccaggcggaatgatggggcaggcttttgatcctactggt
tatggcgcaatgggaaggatgggtgctgggtttggtggattccctggtgcaccaggggca
gggccattccctgggttgatgcagccattcccacctgtggttgcaccacatgttaatcct
gctttctttggaaggggtgggatgggtgctggcggagttggtatgtggcctgaccccaac
atggggggatggggtggggaggaacaatcaagttatggggatgatgcagcgtctgatcag
cagtatggggaagggggaagccatggtaaggagagggccgagaggccacctgatagggag
tggtctggtgcatcggagaggaggcgggagagggagaaggatatacccccagcacaggag
tggccagataggaagcaccgggatgaacgagacatgggccgagagagagatcgtgactat
gacagagagagggagagagatcgtgatagggagagagaaagagaccgtgacagggagagg
gacagagagagggacagggaaagggagagggataggcacagggatgacagagaccgctat
ggcgattatcatcggcacagggaccgtgattcagagcgtaatgaagattgggacagagga
agatcatctggtgtgcgcagcaggtctagggaggttgatcattctaagcgtaggcggatg
acgcctgagtag
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