Oryza glaberrima (African rice): 127783332
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Entry
127783332 CDS
T08853
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127783332
09123 Folding, sorting and degradation
03018 RNA degradation
127783332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127783332
03041 Spliceosome [BR:
ogl03041
]
127783332
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127783332
mRNA degradation factors
5'-3' decay
Lsm complex
127783332
Spliceosome [BR:
ogl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
127783332
Complex C
U2 snRNP components
127783332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
DUF150_C
DUF1256
Motif
Other DBs
NCBI-GeneID:
127783332
NCBI-ProteinID:
XP_052166547
LinkDB
All DBs
Position
8:2564613..2568120
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AA seq
93 aa
AA seq
DB search
MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVLLPQDGVDIDILHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcttctcctacttcaaggagctcgtggggaaggaggtgacggtggagctcaag
aacgacctggccatccgcggcacgctccactccgtcgaccaatacctcaacatcaagctc
gagaacactcgggttgtcgaccaggacaagtacccgcacatgctatccgtgcgaaactgc
ttcatcaggggatcggtggtgcggtacgtgctgcttccccaggatggcgtcgacattgac
atcctccatgatgccaccaggagggaggctcgcggaggctga
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