KEGG   Oryza glaberrima (African rice): 127783332
Entry
127783332         CDS       T08853                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03018  RNA degradation
ogl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127783332
  09123 Folding, sorting and degradation
   03018 RNA degradation
    127783332
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ogl03019]
    127783332
   03041 Spliceosome [BR:ogl03041]
    127783332
Messenger RNA biogenesis [BR:ogl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     127783332
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     127783332
Spliceosome [BR:ogl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    127783332
 Complex C
  U2 snRNP components
    127783332
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF150_C DUF1256
Other DBs
NCBI-GeneID: 127783332
NCBI-ProteinID: XP_052166547
LinkDB
Position
8:2564613..2568120
AA seq 93 aa
MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVLLPQDGVDIDILHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgctgttcttctcctacttcaaggagctcgtggggaaggaggtgacggtggagctcaag
aacgacctggccatccgcggcacgctccactccgtcgaccaatacctcaacatcaagctc
gagaacactcgggttgtcgaccaggacaagtacccgcacatgctatccgtgcgaaactgc
ttcatcaggggatcggtggtgcggtacgtgctgcttccccaggatggcgtcgacattgac
atcctccatgatgccaccaggagggaggctcgcggaggctga

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