Oryza glaberrima (African rice): 127784784
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Entry
127784784 CDS
T08853
Name
(RefSeq) flap endonuclease GEN-like 1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
ogl
Oryza glaberrima (African rice)
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127784784
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
127784784
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Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
XPG_I_2
5_3_exonuc
Motif
Other DBs
NCBI-GeneID:
127784784
NCBI-ProteinID:
XP_052168114
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Position
9:19201707..19206937
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AA seq
630 aa
AA seq
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MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFF
RTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLTALPSTEAEASADAPVQPR
NAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTV
IKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQ
LFDEDNVLAKLYEIGKGVYPFIEGVSAPNIDDLPSPSTKSLPRARSPHCSHCGHPGNKKN
HIKDGCNFCLVDSLENCVEKPAGFICECPSCDKARDLKVQRRNENWQIKVCKRIAAETNF
PNEDIINLYLSDDNLDNENGVPLLTWNKPDMEILVYFLSFKQNWEPAYIRQRMLPMLSTI
YLREMASSQSKSFLLYDQYKFHSIQRIKIRYGHPYYLVKWERVTRSMISNDSPSKQTELE
GKNDKVEVLDGDDEVVDEEEEEPTMISETTELLDEPDVPQVLDDDKDCFLLTDEDIELVN
AAFPDEAQRFQEEQRLKEAKSRARKSKLNVAGFETPKGPRPSGVQLSIKEFYRSKKGLSG
DSGKDGSRKSSDVDLSKNLPKSVRRRLLFD
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgggggtggggggaagcttctgggacctgctcaagccgtacgcgcggcacgagggcgcg
gggtacctccgcggccgccgcgtcgccgtcgacctctccttctgggtcgtctcccacagc
gccgccatccgggcgcgctcgccgcacgcgcgccttccccatctccgcaccctcttcttc
cgcaccctctccctcttctccaagatgggtgcttttcctgtgttcgtggtggacggccag
ccgtcgccgctcaagtcgcaggtgagggccgcgcgattcttcagaggatctggaatggac
ctcactgcgctgccgagcacggaggcggaggccagtgcggatgcgccggttcaaccgagg
aatgccaagttcacgcgatacgtggaggattgcgtggaactgcttgaatatcttggaatg
cctgtgctgcgggcaaaaggtgaaggtgaagctctttgtgctcagttgaataatcaaggc
catgtagatgcttgcatcacttcagacagtgacgctttcctctttggggctaagactgtc
ataaaggttctccgatcgaattgtaaggaaccttttgagtgctacaacatggcagacatt
gagtctggtcttggactaaagaggaaacaaatggtagcaatggcacttcttgttggcagt
gaccatgacttgcatggtgtgcctggttttggtcctgagactgcacttcggtttgtgcag
ttatttgatgaagataatgttctagctaaattatatgaaattggtaaaggggtctatcca
tttatagaaggagttagtgcgcccaatattgatgatctcccatcaccctccacaaagagt
ctaccgcgtgcacgatcaccgcactgctcacattgtggtcaccctggcaacaagaaaaat
catatcaaggatgggtgcaacttttgcttggttgattcattagagaattgtgtggagaag
ccagctggattcatatgtgaatgtcctagttgtgacaaggcacgtgatctgaaggtgcag
agaagaaatgaaaactggcaaatcaaggtctgtaaaaggatagctgctgagactaacttt
ccaaatgaggatatcattaacttgtacttgagtgatgacaatttggataatgaaaatggt
gttccattgcttacatggaataaacctgatatggagattttggtttacttcttatctttc
aagcagaactgggagccagcgtatattcgtcagcggatgcttcctatgctatcaaccata
tatttacgcgaaatggcttcatctcaatctaaatcatttcttctttatgatcaatataaa
tttcattcaatccaacggattaagataagatatggtcacccatattacttggtcaagtgg
gagagagtcactcgtagtatgatatccaatgattcacctagcaagcagacagaattggag
gggaagaatgataaggtggaggtattggatggagatgatgaggtagtagatgaagaggag
gaggagcctacaatgatttccgaaactactgaactgctagatgagccagatgttccacaa
gtactggatgatgataaagattgctttttattaactgatgaagacattgagctagtgaat
gctgcatttcctgatgaagcacaaagatttcaggaagaacagaggctgaaagaagcaaag
tcaagagcacggaaatccaagctcaacgtggcaggtttcgaaacaccaaaaggtccaagg
cctagtggagttcagcttagcatcaaggagttctaccgctccaagaaagggctgagtggc
gactcagggaaggacggctcaagaaaatcctccgatgtggacctcagcaagaacttgccc
aagtctgtccgacgacgcctcctcttcgactga
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