Oryza glaberrima (African rice): 127786277
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Entry
127786277 CDS
T08853
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03440
Homologous recombination
ogl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127786277
03460 Fanconi anemia pathway
127786277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogl04121
]
127786277
03036 Chromosome and associated proteins [BR:
ogl03036
]
127786277
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127786277
Ubiquitin system [BR:
ogl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
127786277
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
127786277
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
127786277
FA (Fanconi anemia) pathway
Downstream FA components
127786277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA2
BRCA-2_OB1
BRCA-2_helical
BRCA-2_OB3
Motif
Other DBs
NCBI-GeneID:
127786277
NCBI-ProteinID:
XP_052169583
LinkDB
All DBs
Position
1:complement(2876430..2888209)
Genome browser
AA seq
1580 aa
AA seq
DB search
MRRRWQVWGKPDGSLVWVPASDGPPSAQPLPPAAAAASEAPLPRPDPQPVATALGEARYG
DAIPEGPGAADGCSVPSMADLFNQALDKLVAADRMAEAIEDSGKGAVFCTGLGGSVVVSE
RAVERAKALVGEVAEETSNERRQPFGDGSNLECELGESNVSFKGGVHKDSLSPMFQTGSG
KMVSLSKGSIQKARAVLEGNAENSSVIAVQSMFHTGLVRPDPVSRSSTDNAMTVLEGQTN
PKQGDVADVYDKENFPLFQTGSGKVVSVSVASIQKAKAVLEQNNTVENMEDFGRPDQSLI
FQTGSQRPVLISERSSSVVKDGGAENIVFQTGLGRPVVVSQTSIQKARTVLDQECAKRSG
HGYTNVSITTFQTETPRSVLMSGGLTMNDRSVTPEGGVSMQGNFLGADGHLPLFQTGLGR
SISVSKGSIKRASALLEPRNITKELEDEAHSDDGCATPMFKTGSGRSITASENSRKKAHV
VLEGEEPVKNVNNDTGEAIAPMLHVGMQKFAPQNRNSSHKAITLMEQGSSMKEEYIDRGN
EPPMFRTGSGKSVLISHSSVQKARAVLEEEGNMKKENQKQLSNVDKYIPIFTSPLKTSCA
RTVHISSVGVSRAATLLGLEENTLSTQLLGHVGDKLGTKITVERKNSEHQFGVASVSGIS
GGCPISSGPAENQVLMDPHQHFAFSKTTFSDSSEQAIRFSTAGGRTMAISSDALQRAKNL
LGESDLEVSPNNLLGHSSASACKENIQNSTGLRKEGEPVLLKSRGNNKTEPAQFSIPAKP
DRKHTDSLEYAVPDVTLANGNSIRLHAARDFHSINEIPKIPKPSSRCSFGTENASDTKDK
ARRLQMPSGPLIDITNYIGTHSVNTDYLAGEKRRFGGRNSISPFKRPRSSRFIAPININN
PSPAGVSKLPIQINPCRTKLSSCYPFQHQRKSCEEYFGGPPCFKYLTEDVTDEVKLMDAK
KAEKYKFKTDTGAEEFQKMLLACGASLTYTTKEWVSNHYKWIVWKLASLERCYPTRAAGK
FLKVGNVLEELKYRYDREVNNGHRSAIKKILEGNASPSLMMVLCISAIYSCPDLNNSKPE
DDRAHTDDDNSENKSLRAAKRNMSTKIELTDGWYSLDASLDLALLEQLEKRKLFIGQKLR
IWGASLCGWAGPVSFHEALGTVKLMIHINGTYRARWDETLGLCKHAGVPLAFKCIKASGG
RVPRTLVGVTRIYPVMYRERFSDGRFVVRSERMERKALQLYHQRVSKIAEDIQSEHGEHC
DNTDDNDEGAKICKMLERAAEPEILMSSMNSEQLLSFSYYQEKQKIVRQNEVAKKVENAL
KVAGLSSRDVTPFLKVRVMGLISKHSATKSGRREGLITIWNPTEKQKSDLVEGQIYSVTG
LLASSYFTEVSYLSGRGSSTAWTPLATAQTTNFEPFFTPRKAVELSHFGEVPLTSEFDIA
GVILYVGNVYLLNNQNRQWLFLTDGSKFISGEKYEEQDDCLLAVSFSSKTTGEDSAFFNY
ALSGNIVGFSNLVKRDKDQMRHVWVAEATESSTYSLSHEIPKKSHLKEAATSAEKWASNS
HPMIQHLKERVLQIVGDSGG
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atgcggaggaggtggcaggtgtgggggaagcccgacgggagcctcgtctgggtacccgcc
tccgacgggccgccttccgcgcagccgctgccaccggcggcggcggcggccagtgaggcg
ccgcttcctcgtcccgatccgcagccggttgcgacggcgctgggagaggcgcgatacggc
gatgcgattcccgaaggccccggcgccgccgatggatgcagcgtcccgtcgatggctgac
ctcttcaaccaagctttggataagctggttgctgctgatcgaatggccgaagcgatcgag
gattcagggaaaggtgcggtgttctgcactgggttggggggatcagttgtcgtcagcgag
agggctgtagagagggccaaggcattggttggggaggtcgcggaggagacaagtaatgag
agaaggcaaccatttggtgatggttctaatttggagtgtgaattgggagaaagtaatgtt
tcatttaaaggtggtgtacataaagatagtctgtctccgatgttccaaaccggatcgggt
aaaatggtttcactgagcaagggctcaattcagaaggctagagctgttttagaaggaaat
gccgagaattcttctgtcattgctgtacagtctatgttccatactggattggttaggcca
gacccagtcagcaggagctccactgataatgcaatgactgttttggagggacaaacaaat
ccaaaacaaggagatgtggcagatgtgtatgacaaggaaaattttccattgttccaaact
ggttcaggtaaagttgtatcggtcagtgtagcatctatccagaaagctaaggctgtcctg
gagcaaaataatacagtagaaaacatggaagattttggtaggcctgaccaatctctgatt
ttccaaactggttcgcaaagaccagtcttgatcagtgaaagatctagctctgtggtgaag
gatggaggtgctgaaaatattgtgttccaaacggggttagggaggcctgttgtggtgagc
cagacctcaattcaaaaggcaaggacagtattagatcaagaatgtgccaaaagaagtgga
catggatatactaatgtctccatcactacttttcaaactgaaacaccaaggtctgttttg
atgagtggtggcctgactatgaatgatagatctgttacaccagaggggggtgtttcaatg
caaggaaattttttgggggctgatggtcacttgccattatttcaaactgggttagggagg
tccatttcagtaagtaaaggctcaattaagagagcaagtgcacttctggagccaaggaac
attacaaaagaactggaagatgaagctcactcagatgatggctgtgccactccaatgttc
aaaactggatcaggaaggtctatcacagcaagtgaaaattctagaaagaaagcccacgtt
gtcttagagggcgaggaaccagtaaaaaatgtaaataatgacactggagaagccattgct
ccaatgctccatgttggaatgcagaagtttgcaccccaaaatagaaactcaagtcataag
gcaatcaccctcatggagcaagggagctctatgaaagaagaatacatagaccgtggaaac
gaaccaccaatgtttcgaactggatctgggaagtcagtcttgattagtcacagctccgtg
cagaaggcaagggcggttctggaggaagaaggcaatatgaagaaagaaaatcaaaagcaa
cttagcaatgtggacaaatatattccaatctttacttcacctctcaagacaagctgtgca
aggactgtacatatatcttcagttggtgtctctcgagctgcaactttgttgggtttggag
gagaataccctttcaacacaacttttaggacatgtgggtgataagctaggtacaaagata
actgttgagaggaaaaattcagagcaccagtttggtgtagcatcagtcagtggaatttcc
ggtggctgccctataagctctggcccagctgaaaaccaagtacttatggatccacatcag
cattttgcattttctaaaacaacgttctctgattctagtgagcaagctatcaggttcagc
actgctggcggcagaacaatggctatttctagtgatgcacttcagcgtgcgaaaaatctt
ctgggtgaatcggatttagaggtttcaccaaataatttattaggccactcttcagcatct
gcttgtaaagagaatatacaaaattcaactggtctgcgaaaagaaggtgaacctgtttta
ttgaaaagtagggggaacaacaaaactgagccagcacaattttccattccagcaaaacct
gataggaagcacacagattccttggaatatgctgtacctgatgtcactttggctaacgga
aactccatcaggcttcatgcggcaagagattttcattctatcaatgaaattccaaagata
cccaagccttcttccagatgttcatttggaactgaaaatgcaagtgacactaaagataag
gctcgaagactccaaatgccatctggaccattgattgacatcactaattacatcggtaca
cattctgttaatactgactacctggctggtgagaagagaagatttgggggaagaaactcc
atatctccctttaaacgtcctcgttcttccaggttcatcgcacctatcaacatcaataat
ccatcccctgctggagtatccaaactacctattcagattaatccctgtcgaacaaagcta
tcttcatgctatccttttcaacatcaaagaaaatcgtgtgaagagtattttggtggtccc
ccatgcttcaaatatttgacagaagatgtaacagatgaggtgaagctcatggatgcaaaa
aaggctgagaagtacaagtttaaaacagatactggtgcagaagaatttcagaagatgctt
cttgcctgtggtgcttctttgacatacacaactaaagaatgggtcagcaaccactacaaa
tggattgtttggaagcttgcttcattggagagatgctatccaactagagctgctggcaaa
ttcttaaaagttggtaatgttttggaagagctgaagtacaggtatgacagagaagtgaac
aatggccaccgctcagccataaagaaaattttggaagggaatgcttcaccatctttgatg
atggtgctgtgcatttctgctatttactcttgtcctgacctaaacaacagtaagccagag
gatgatagggcacatacagatgacgacaacagtgagaataaaagcttgagagctgctaaa
aggaacatgtctacaaagattgaactaactgatggatggtattctctagatgcgtcatta
gatctggcacttttggagcaactagagaaaagaaaactttttataggacagaagcttcgg
atatggggagcttcactatgtgggtgggctgggcctgtgtcgtttcatgaggcattgggt
actgtcaaattaatgatccacataaatggcacctatcgtgcaagatgggatgagactttg
ggattatgcaagcatgctggagtcccactggcattcaagtgcataaaagcttcaggtggt
agagttcctaggacactggttggagttacaaggatttatcctgttatgtacagggagagg
ttttctgatggtcgttttgtggtgaggtctgaaaggatggaaagaaaagcactacagctg
tatcaccagagagtgtctaagattgcagaagacattcagtcagaacatggagaacactgc
gacaacactgatgataacgatgaaggggcaaaaatatgcaaaatgctagagagggcagct
gaacctgaaattcttatgtccagcatgaattcagagcagctgctgtctttctcatattat
caagaaaagcaaaagattgtcaggcaaaatgaagtagctaagaaggttgaaaatgctctt
aaagttgctgggcttagttcaagagatgttacaccatttttgaaagtgagggtgatgggc
cttatcagcaaacactccgccacaaaatctggccgcagggaagggttaataacaatttgg
aaccctactgagaagcaaaaatccgacctggtggagggacaaatttattctgtcacagga
ctgttggcttcaagctactttacagaagtatcctacttgagtggtagaggatcatctaca
gcatggacgcctttagcaaccgcacagactacaaattttgaaccatttttcacccctcgt
aaagcagttgaattgtcacattttggtgaagtgccactcacaagcgaatttgacattgca
ggtgttattttgtatgttgggaatgtttatttattgaacaaccagaataggcagtggctc
tttttgacagatggatctaaatttatctctggagaaaagtatgaagagcaagatgactgt
cttctggcagttagcttttcttccaaaaccactggcgaggattctgcattcttcaattat
gccctttctggaaatatagttggttttagtaatctggtcaagcgagataaagaccagatg
aggcacgtgtgggtagctgaggcgacagagagctccacttatagtctctcccatgagata
cctaaaaaatcacatctcaaagaggctgccacttctgctgaaaaatgggcttcaaattct
catcctatgattcagcatctgaaggaaagagttctgcaaatagttggtgacagtggtggc
tga
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