Oryza glaberrima (African rice): 127786355
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Entry
127786355 CDS
T08853
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
ogl
Oryza glaberrima (African rice)
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogl03000
]
127786355
03036 Chromosome and associated proteins [BR:
ogl03036
]
127786355
Transcription factors [BR:
ogl03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
127786355
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
127786355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ADD_ATRX
zf-4CXXC_R1
YlbD_coat
Motif
Other DBs
NCBI-GeneID:
127786355
NCBI-ProteinID:
XP_052169693
LinkDB
All DBs
Position
10:16336553..16350146
Genome browser
AA seq
1478 aa
AA seq
DB search
MDENRKLSDDMSKKMEPIHSNGEAGEDKTIIIEPESDANKLEVETDARHGICEAHKVHEY
GTMENDLHEEASTTDDDSENDSYEYLLRESDNEQTSESDAGEGDNEAPLTDEEVETLITE
FLDAESKAAQAQESLEKESLEKIESEVRLELSESLQGNELESAVSTEMKQYKKEWESELD
DLETHIAVLLEQLDAAGVELPSLYKSIESQVPNVCETEAWKNRAHWAGYQVPEEANKSIR
KADEYLQSCRPVRRKHGRLLEEGASGFLAGKIPVGDDGSAQCHEKSWNAFNELTKSKEYA
ESSFGSSNWASVYLASTPQEAAALGLQFPGVDEVEEIAEVEGAVSDIKGVDEIELSEVQR
RKYRKVPEEDDAKMTKRLQRHLKERRTRHLHKENIGLASSSNGRCELPPKKLKTYENGVS
VELAKRTREDDVEFDNKRSKTVIIESDDDMQTDSKPDSAPSENADEIIDLDIFPSQSPKL
GDKVRPKPFKCTICTEMLNVPEVHRHPVLDVIICGSCRFLVIEKNRLEDPVSGGYCTWCV
KSEQLQSCSSCKLLFCRNCLSKNFGEEGLSEARVAGWQCCCCLPSQLEHLISDCDKALGG
VESSDPENDFAELSVIESNGPFSKHKMKKRIRRIMDDEELGEETKLKIAMEKARQEHLKS
MQEQSASKLKSNNIGISLEAPSEVSEYVGDGHIVNLAREEDEAPVRIPSSISAKLKPHQV
SGIRFMWENVIQSVKKVKSGDKGFGCILAHNMGLGKTFQVITFLYTVMRCIQLGLRTALI
VTPVNVLHNWKKEFIKWCPAELKPLRVYMLEDVPRCRANIQYLLKKWRIKGGVLLIGYSS
FRNLSLGRSARDKTVANEITNALQCGPDILVCDEAHIIKNRRADTTQALKQVRTQRRIAL
TGSPLQNNLMEYYCMVDFVREGYLGSSHEFRNRFQNPIENGQHTNSTSDDVKIMNQRSHI
LYEQLKGFVQRMDMNVVKNDLPEKKVFVVTVKLSQLQRKLYRRFLDVNGFSSSAASEKSF
QRSGFFAKYQTLALIWNHPGLLQMAKQKGNLRQEDVESFLMDESSSDDNIENYLPNGEKL
RSRNDQLSKKSSDVVNEESNWWENLLDENAYKEADYSGKMVLLLDILSSCSELGDKALVF
SQSLSTLDLVEFYLSKLQVNGKEGKYWKQGKDWYRIDGSTPSSERQNLVERFNDPENIRV
KCTLISTRAGSLGINLHAANRVILLDGSWNPTHDLQAIYRVWRYGQTKPVYAYRLMAHAT
MEEKIYKRQVTKEGLAARVVDRQQVSRTISKEEMLHLFEFGDEELLEQSGSTMNGHSKVG
TEKPPTPNSSETTEHLPLDRLMVNLLHDHSRWIASYHEHEALLQENEEERLTKEEQDMAW
LSYNKLLEVAPRKATHDAERKPSTVPTESSLIQPPKATSRSRQPQQPKITSNNQKKCNNL
SHLLTLRSQGTKPGCSTSCKECGQDISWETLNRDGRSR
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atggatgagaatagaaaattatctgatgacatgtccaagaaaatggaacctattcactct
aatggagaggcaggggaagataaaactataattattgaacctgaaagtgatgcaaataaa
cttgaagtggaaactgacgcaagacatggtatctgtgaggcgcacaaggtgcatgaatat
ggaacaatggaaaatgatttgcatgaggaagcatccaccaccgatgatgattcagagaat
gactcatatgaataccttcttcgggaatcggataatgagcaaacttcagagtctgatgct
ggtgagggagacaatgaggcacctctcactgatgaagaagttgaaacattaattaccgaa
ttccttgacgctgagagcaaggctgctcaagcgcaagaatcacttgaaaaggagtcactg
gaaaagattgaatctgaagtaaggttggagctatcggagagtctccaaggaaatgagtta
gagtcagccgtttctactgagatgaagcaatacaagaaggaatgggaatctgaactcgat
gatttggagactcacattgctgttctcttggagcaacttgatgctgctggtgtcgaactt
cccagcctctacaagtctatagaaagccaagttccaaatgtttgtgaaactgaagcatgg
aagaacagggctcactgggctggttatcaagtgcctgaggaagctaataaatcaatcaga
aaagctgatgaatacctccaatcttgtagacctgtaaggagaaaacatgggaggttgctg
gaggaaggtgctagtggctttcttgccggaaagattcctgttggggatgatggatctgca
caatgccatgagaaaagttggaatgcattcaatgaacttaccaaatctaaggaatatgct
gaaagttctttcggaagtagtaactgggcatcagtttatctggccagtaccccacaagaa
gcggctgctttaggtctccaatttccaggagttgatgaggtggaggagatagctgaagtt
gagggtgctgttagtgacataaaaggtgtcgatgaaatagagctttctgaagtacagaga
agaaaatacagaaaggtaccagaagaggatgatgcaaagatgacaaaacgtctgcagcgc
catttgaaagaaagaaggacaagacatttgcataaggagaacattggtttggcgtcatca
tcaaatggacgctgtgagctgcctcccaaaaaactcaaaacatatgaaaatggagtttct
gttgagctagcgaagcgcacacgtgaagatgatgttgagtttgacaataagaggtcaaaa
actgtaattattgaaagtgatgatgacatgcagactgatagcaagccagattcagcacca
agtgaaaatgcggatgagattattgatcttgatatcttcccatcacaaagccctaaactt
ggtgataaagttcggcctaaacctttcaagtgcactatttgcactgaaatgttgaatgtc
cctgaagtgcaccgccacccagtattggatgttataatttgtggatcttgcagatttcta
gtgatagagaagaatcgtctcgaggatcctgtgtctggtggttattgcacctggtgtgta
aaaagtgaacagcttcaaagttgcagctcttgtaaactgcttttctgcagaaattgcttg
tcaaagaattttggtgaagaaggcttatcggaagctagagtagctggttggcaatgttgc
tgctgcctacccagtcaactggaacatttaatttctgactgtgacaaggccctaggtggt
gttgagtcttctgatcctgagaatgactttgcagagctttctgtaatagagagcaatggt
ccttttagcaagcataaaatgaaaaagaggataagaagaatcatggatgacgaagaactt
ggagaggaaacaaagcttaaaattgcaatggagaaggctaggcaagaacatctgaagtcc
atgcaagagcagtctgccagcaagttaaagagcaacaatatcggaatttccttggaagca
ccatctgaggtttctgaatatgttggggatggacatatagtaaaccttgcccgcgaggaa
gatgaagcacctgttagaattccaagcagcatatctgctaaactgaaacctcatcaggta
tcaggaataagatttatgtgggaaaatgtgatccaatctgtcaaaaaggtcaaatctggg
gataaaggttttggttgcattttggctcacaacatgggccttgggaaaacttttcaggtt
attacattcctgtatactgttatgagatgcatccagttgggactgcgcacggcgcttata
gttacccccgttaatgttttgcataactggaagaaagagttcatcaaatggtgtccagca
gaacttaagccacttcgtgtgtatatgttggaggatgttccaaggtgcagggcaaacatt
cagtatttactaaaaaagtggcgaataaaaggtggcgtgcttctgattggttattcatca
tttagaaacctttccctcggaaggagtgcgagggacaaaactgttgcaaacgagatcacc
aatgctttgcagtgtgggccagatattcttgtatgtgatgaagcacatataattaagaac
aggagagctgacactacacaagctttgaaacaagtaaggacacagagaagaattgcgtta
actggatctccattgcagaataatttgatggaatattactgtatggttgattttgttagg
gaaggttatcttggaagtagccatgagttccgtaacaggttccagaaccccattgaaaat
gggcagcacacgaattctacatcagatgatgtcaagatcatgaaccaacggtcacatatt
ctgtatgaacaactgaagggatttgtccagcgaatggacatgaacgtggtgaagaatgat
ctaccagaaaagaaggtttttgttgttactgttaaactctctcaactacaaaggaagctg
tacagaagattcttggacgtgaatggtttctcaagcagtgctgcttcagaaaaatctttt
cagcggagtggcttctttgccaagtaccaaacgttagcgctgatatggaaccatcctggt
cttctccagatggctaaacagaaaggaaatttgcgccaagaagatgtcgagtcctttctg
atggatgagagctctagtgatgataatattgaaaattacttgccaaatggagagaagctg
agaagcagaaatgatcagctatccaagaaaagttctgatgttgtaaatgaggaaagtaac
tggtgggagaatcttttagatgaaaatgcttataaggaagcagattatagtggcaaaatg
gttttactccttgatatcctgtcatcatgttctgaattgggtgacaaggcattagtgttc
agccagagcttgagcactctggatttggtggaattttatctatctaagttgcaagttaat
ggaaaagagggcaaatattggaaacaaggcaaggattggtacaggattgatgggagcact
ccatcttctgagcgacaaaatcttgtggagaggtttaatgaccctgaaaacattagagtg
aaatgcacattgatatctactcgtgctggatctctaggcattaaccttcatgcagcaaac
cgtgtgattcttcttgatggttcatggaatccaacccatgatttgcaagccatctatcgg
gtttggaggtatggccagaccaagcctgtgtatgcttaccgcctaatggctcatgcaaca
atggaagagaaaatatataaacggcaggtgacaaaagaagggcttgcagcaagggtggtg
gatagacagcaagtgtctagaacaatctctaaagaagagatgttgcatcttttcgagttt
ggtgatgaggaactactggagcagagcggttctaccatgaatggtcacagtaaagttggg
actgagaagccacctactcccaactccagtgaaaccactgaacatttacctttggacagg
ctcatggtgaacctacttcatgaccactcccggtggatcgcaagttaccatgaacatgaa
gcccttctgcaagaaaatgaagaagaaaggcttaccaaggaggagcaagatatggcatgg
ttaagctacaacaagttgctagaagttgccccgaggaaagctacacatgacgccgagaga
aaaccaagtactgttccaacagagagcagccttatacaaccacctaaagctacttcaaga
agccggcaaccccagcagcctaagatcacttcaaacaaccaaaagaagtgtaacaatctg
agccacttgcttactctgagaagccaaggcaccaagcctggatgcagcacgagttgcaaa
gaatgtggccaggatattagttgggagacgctaaacagagacggtagatcaaggtga
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integrated database retrieval system
