Oryza glaberrima (African rice): 127786387 Help Entry 127786387         CDS       T08853                                  Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism ogl  Oryza glaberrima (African rice) Pathway ogl03040   Spliceosome ogl04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:ogl00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     127786387   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     127786387  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:ogl03041]     127786387    04121 Ubiquitin system [BR:ogl04121]     127786387    03400 DNA repair and recombination proteins [BR:ogl03400]     127786387 Enzymes [BR:ogl01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      127786387 Spliceosome [BR:ogl03041]  Complex B   Other components    Prp19 complex     127786387  Complex C    Prp19-CDC5 complex     127786387 Ubiquitin system [BR:ogl04121]  Ubiquitin ligases (E3)   U-box type E3    127786387 DNA repair and recombination proteins [BR:ogl03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     127786387 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_EML_2 Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd WDR55 EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_IFT122_1st PEP5_VPS11_N Beta-prop_SPT8 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_DCAF4 U-box zf-Nse PAN2_N PAS_11 V_ATPase_I_N KNTC1_N PUMA_CC Motif Other DBs NCBI-GeneID:  127786387 NCBI-ProteinID:  XP_052169747 LinkDB All DBs Position 10:complement(16657849..16664967) Genome browser AA seq 527 aa AA seqDB search MICAISGEVPDEPVVSKKSGLLFERRLVERYIEDHGKCPVTKEELTMDDIVAVKTNKVVK PRQLQAASIPGLLGMFQNEWDAIMLSSFALEQQLHTARQELSHALYQHDAACRVIARLKK ERDEARALLAQAERQIPASMAGAAPTAVVSNGKRAFEDEVGPDGKKIRPGINPVMIDELT ECNTMLSAHRKKRQVPPTLASIDAIERYTQISSHPLHKTNKPGILSMDIHPSKDIIATGG IDTNAVLFDRPSGQILCTLTGHSKKITSLKFVPRDELFVTGSADKTVKIWQGSEEGNYNC IHTLKDHTAEVEAVTVHATQKYFVTASKDNTWCFYDIPSGSCLTQVGESSGQEGYTSASF HPDGLILGTGTTEAVVKIWDVKTQSNVAKFEGHVGPVTAMSFSENGYFLATAALDGVKLW DLRKLRNFRTISPYDSDTPTNSVEFDFSGSYLAVGGSDTRVYQVANVKLEWNLVKTLPDL SGTGKVTNVKFGTDAKYIAVGSMDRNLRIFGLPGEDDQMDDAKPSEE NT seq 1584 nt NT seq  +upstreamnt  +downstreamnt atgatctgcgcaatctccggcgaggtgccggatgagccggtggtgtcgaagaagtccggg ctgctcttcgagcggcggctcgtcgagcgctacatcgaggaccatgggaagtgcccagtc accaaggaggagctcaccatggacgacatcgtggcggtgaagaccaacaaggttgtgaag cccagacaattgcaggctgcaagcattcccggactcctggggatgttccaaaatgagtgg gatgctatcatgctttctagttttgctttggagcagcagcttcatacagcaagacaagaa cttagtcatgcgctatatcagcatgatgctgcctgccgtgttatagctagattaaagaaa gaacgagatgaagccagagcacttttggctcaagctgagagacagattcctgcatcgatg gcaggagctgcacctacagctgttgtctccaacgggaaaagagcatttgaagatgaagtt ggaccagacgggaagaagattcgtcctggtatcaaccctgtgatgattgatgaactaaca gagtgtaataccatgctctctgcgcatcgtaagaaacgacaggttcctccaactttggca tcaattgatgcaattgagagatatacccagatctccagtcatccacttcacaagacaaac aaaccaggcatcttatctatggatattcatccttcaaaggacattattgcaactggtggc attgatacaaacgcagtgctttttgacaggccatccggtcaaatcttgtgcacacttact ggtcactcaaagaagataaccagtttgaaatttgttcctcgggatgagctctttgtaact ggatcagcagataagactgttaaaatttggcaaggaagcgaggagggaaattacaattgc atccatacattgaaagatcacactgctgaggttgaagctgttacagtccatgcgactcag aagtactttgtgactgcttccaaggataatacttggtgcttctacgatattccatcagga tcttgcctcacacaggttggcgagtcttcaggacaagagggatatacatctgcatctttc cacccagatggtcttatcctggggacagggaccactgaagctgttgtcaaaatttgggat gtgaagacgcagtcaaatgttgcaaagtttgaggggcatgttggaccagtgactgctatg tccttctctgaaaatggttacttccttgcgactgctgctctcgatggagtcaagctttgg gatcttcgaaaattaagaaactttaggacgatatcaccttatgactcagacacgccaaca aattctgtggaatttgactttagcggaagttatctagctgttggtggttcagatacaagg gtttaccaagtagcaaatgttaagcttgaatggaatcttgtcaagaccttaccagatttg tcaggcacagggaaagtgacaaacgtcaagtttggcaccgatgcgaagtacattgccgta ggttctatggatcgtaacctacggatatttgggcttccgggagaagatgatcaaatggac gacgcaaagccatcggaggagtga

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