Oncorhynchus gorbuscha (pink salmon): 123989406
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Entry
123989406 CDS
T07892
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03082
ATP-dependent chromatin remodeling
ogo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123989406 (smarcb1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
123989406 (smarcb1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ogo01009
]
123989406 (smarcb1b)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
123989406 (smarcb1b)
03036 Chromosome and associated proteins [BR:
ogo03036
]
123989406 (smarcb1b)
Protein phosphatases and associated proteins [BR:
ogo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
123989406 (smarcb1b)
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
123989406 (smarcb1b)
SWI/SNF complex
123989406 (smarcb1b)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
123989406 (smarcb1b)
PBAF complex
123989406 (smarcb1b)
SWI/SNF complex
123989406 (smarcb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
123989406
NCBI-ProteinID:
XP_046146359
LinkDB
All DBs
Position
LG11:72604810..72621658
Genome browser
AA seq
370 aa
AA seq
DB search
MALSKTFGQKPIKFQLEQDGDFYMVGSEVGNYLRMFRGSLYKRYPSLSRRLASVEERKKI
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKGKRNSQWVPTLPNSS
HHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSERENSPETFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFRSDFSENPLPTVEIAIRNTGDADTWCPLLETLTDAEMEKKIRDQDRNTRRM
RRLANTAPAW
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaagcaaaacctttgggcagaaaccgattaaatttcagttagagcaagatgga
gacttttacatggttggatcagaggttggaaactacctgcgtatgttcaggggctccctg
tataaaaggtacccatcactctcgaggaggttagcctcagtagaggagaggaagaaaatt
gtagcatcatcgcacgccacaagtgtgactctgctgaaggcctccgaatgtgaagagatt
ttcgaggggaacgatgagaagtacaaagctgtttccatcagcacagaaccaccggcctac
ctcagggagcagaaggggaagaggaacagccagtgggtccccacactgcccaacagctcc
caccacctggacgctgttccctgctccaccaccatcaaccgcaaccgcatgggccgcgac
aagaagaggaccttccctctgtgctttgacgaccacgacccggcggtgatccacgagaac
gcgtctcaggccgaggtgctggttcccatccgtctggacatggagattgatgggcagaag
ctcagagatgcgttcacctggaacatgaacgagaagctgatgaccccggagatgtttgca
gagatcctgtgtgacgacctggacctgaacccactggccttcgtcccggccattgcctca
gccatccgccagcagatagagtcctaccccacagacagcatcctggacgagcagaccgac
cagagggtcatcatcaagctgaatatccatgttgggaacatctccttggtggaccagttt
gagtgggacatgtcggagagggagaactctccggagacgtttgccctcaagctgtgctcc
gagctgggcctgggaggagagtttgtcaccaccatcgcctacagcatccgtggccagctc
agctggcaccagaggacgtacgccttcaggtctgatttcagtgagaatcccttgcctacg
gtggaaatcgccatccgcaacacaggcgacgctgacacatggtgccccctgctggagacc
ctgacagacgcagagatggagaagaagatcagggaccaggacaggaacactagacgaatg
agacgacttgccaacactgcccctgcctggtag
DBGET
integrated database retrieval system
