Oncorhynchus gorbuscha (pink salmon): 123990241
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Entry
123990241 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: neural-cadherin-like
KO
K27892
neural-cadherin
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ogo04515
]
123990241
Cell adhesion molecules [BR:
ogo04515
]
Cadherins
Cadherin related
123990241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Ig_Shg
Cadherin_CELSR2_9th
Cadherin_pro
EGF
hEGF
Big_9
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
123990241
NCBI-ProteinID:
XP_046146779
LinkDB
All DBs
Position
LG02:43847343..44010766
Genome browser
AA seq
2961 aa
AA seq
DB search
MKLLNHSVVQLVTTMILYILLTYCLFVFGYKTDDRLPFFHGHVFENSPKASKVNGLSIPV
KRINAQKWCPESGMHLKLYGNGSEDFHVFAHHKQGNILLKTSRILDREERFEYLLSVSLC
CQTCVSAGHVAFQVASVKVDVLDTNDHEPTFRNADLKLTLNDATPLRSVVYTMEALDADS
GKNAELTYFPVPKNGSFYVVPKTGEVLLMDSLLGLPSAIKFYVFAKDHGWPCRISKGVEI
TVTPRQWCPLRPGQPGELGSLGRAGRMHRALLDSGSMVFLNVSEDASIGSVVMSLSPARF
QAASFELVYPKTDITPINVGKESGDIVIAMRLDRETEPFIEITVKIQEERGPDWYLTKVK
LRVTDVNDNVPEWAMEPYPYLAVVSPEAPPGELVYPLHALDGDEGSSGEVEYFLADGGNG
CFAVDKKSGHILTTGLPLQIDREYLLSVVAFDRLGSRSAPAMVSVIAGPRTPQFTKTSYA
ISIPENTPEGQPFLVMFAISFQKQPISYSLLINPSSLFRMQQETGEISLTRTLDYENDQR
RYLLMVRASEEPGGLSSAIEVQVVITDENDCVPEFLQSIYSVDGVPETVTTATSLLQVLA
SDCDSGLNAELTYYTLSPDFSISAHGTIFPVGRLDYERPNHLYEFVVMAVDNGEEPHSGT
ATIRLRMANVNDQAPEFSQTVYRTFVSEDAGPNTLVATVLAKDPDGDGIVYSFTAGNEEG
NFVIDSQKGLIRLRSTPPPKLQGLEYVLNVTATDDNASGGPHPLSATARVIVGVDDVNNN
KPIFEKCQKYREQASVLENQPTGTFVLQVHAVDADEGANGKVKYGLMHRDRAMPAFRVHP
DTGVIVTARRFDRERQREYSITVTATDWADEPLIGICQLNVLIQDHNDNSPKFENLRYEY
FLREDTMIGTSFLRVAAHDDDFGTNAVVTYSMSQEQPEYLRVNPVTGWVYVNQPISQRSY
ITREVVATDGGNRSTSVELSVTITNVKNQPPQWEKDSYSVVIPENTARDTSIVTIKATSL
LGDPRVTYNLEEGVVPETNMPVRFYLSPNREDGSASILVSEPLDYETTPSFSLRVRAQNV
AAVPLAAFTTIYVNVTDVNDNVPFFTSSIYEASVTEGAKVGTMVLQVSAHDKDLGLNGQI
TYTLLSDSSGDHRLFRVDPELGSIYTEAVFDREAQGSYLLEVQSEDGMESARPGRNKQPN
FDTAYVRVFISDVNDNKPVFAQRLYEVGIDEDADVGLAVVTVGANDEDEGANAKLRYQIT
SGNTGGVFDMEPEVGTIFIAQPLDYELQKRYKLLVLASDGKWEDYAAVVVNVVNKNDEAP
VFSMNEYYGSVTEELDGSPVFVLQVTAIDPDKDADQVAVRYSLHGQGSESKFVIDEITGK
MYAQKTLDREERAVWRFVVLATDEEGEGLTGFTDVIINVWDINDNAPSFVCVPDGCHGNV
AENSPPGTFVMEMTATDLDDTAVGQNAILSYRIIENVYDAGAANFFTVDASTGTISVATG
GLDREVAERHQLVVEAKDGEGMMGTATATIIITDLNDHTPRFKDKWCGARVSESSPPDST
VLKLDAVDPDSGPHGLLGFSVVAGDQGERFYMVSHKAEQSGTLRLRKRLDYERPGEQQFN
LTIRVEDSDFSSLIHCIIQVVDENDHVPVFAPTSYTLAPLPEDVAVGTSITQVTASDLDS
DLNGEIIYSISPESDLYGHFTVDGNGIMTVTCPLDREIVAEYQLVVLATDQGSPALTGST
TVQLSLLDVNDNGPELEVTYNPVLWENSPAPQVVWLNQTSTLLHVIDRDSLENGPPFSLS
LPRIYAPDFHLQDHGDGTATLTALHRFDRERQREFFLPVVMTDSGRPPMTVTNTLTVTVG
DQNDNAHQEGEKEIYVHSRRGKMQTTSLGKVYAPDPDDWDNKTYTLDARGMKYFTLDKST
GHLAIRPNTLAGSYYLRVVVSDGVWPDVVSGVTVHVRELEDQAIHLSASLRLTGITARDF
IESQVDKTSRQDMFRGFLSEHLSVSLGAINVFSLTDVGLKTLDVRFSVHSDSYLRPEKLH
GFLAVHKKKLQSLLRVNVSQVQVDECMYTDCRAGEGCSTYLSVSDTPTLVDAGNKALVSV
TVTSSAVCGCTARDRVHQACFSYPTNPCFNGGTCMDTLSGYRCQCPPQYEGPECQQTGRS
FLGNGYAWFPPIRPCFDSHLSLEFITGAEDGLLLYSGPLATLLPRDPEDYMAIELIGGTP
SLKINHGSGTLVLQLPGNVVVSDKRWHRLDVRSNSKEVRFTLDRCSSAIVMETEGVDSWA
MTEDRSSCEVRGVTPNRDRYLNGSQVLQLGGVNENMSYEYPQLQHKHFSGCLRNLVVDSM
LYDLGYPSESSSSAPGCSLTDGNCVNMGVPACGARGRCNGQWDSFRCQCGPGYAGIHCED
EVPEFSFDGRRSHVQYQVGWSLPARHTSVQLQVRTHVPSGVLLSLLSQEQNEYLRLEVFQ
GLLAVFYNLGDRLYNLTLPFQRLDNGEWHEVELDRHGKEFTLRLDGGGGRQEVTAAPGQS
QEIVIDQTVVMLGNSFPSGNNHSFLGCLRDLRLNGRPMPMAKQPSVGSKGLQVVTSQGVS
PGCPSDACRKHQCYPPFICVDLWRKHECRCPPGHMTKENDSSKVCVYTLCVSRPCRHGTC
VAHSPAKYSCHCTEGYRGRHCEVSLTLYHNNDNNTLSLSSAFAISICVLAFLVLMMGLSL
YSCWRRHKGLKEGIYHVSAHHGEWEDIRENVLNYDEEGGGEQDQNAFNMVELQRSLRPSP
AQSLWYSYPQCIIPSSYPQTAKPPDTKNGTKPKGPNGSKNGSTAIALRLAHPPSGSATLT
SPIAMRRSHKSLSFSSQDLARYLCEVIRDTDHSTGDNPGYMTSLRPLSNKAQRGRLAVRS
LSSLSDEGQGSEVRVHGGQESLKGQRSQSPRLDRLKALRAVASELRVDGAVDSAAAKSTE
GQKDKVKDRECRVQPNCEKSG
NT seq
8886 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcctgaaccattcggtggtacaacttgttaccaccatgattttgtatatttta
ttgacttactgtctgtttgtttttggatataaaacggatgatagactgcctttctttcat
gggcatgtatttgagaactcgccaaaggcatcaaaagtgaatggactaagcattcctgtg
aagcgcatcaacgcgcaaaaatggtgtccagaatcgggaatgcacttgaaactctatggg
aatggcagcgaggattttcacgtctttgcccaccataaacagggaaatatattgcttaaa
acttccaggattttggacagggaagagcgcttcgaatacctactgagtgtaagtttgtgt
tgccaaacatgcgtttcagcgggccatgttgcctttcaggttgcgtcggtgaaagtggat
gttttggacaccaacgaccacgaacccacttttcgcaatgcagacttgaaattaactttg
aatgacgcgactccactccggtctgtggtttacacgatggaagcgcttgatgcggacagt
ggaaagaacgcagagttgacgtacttccctgttcccaaaaacggcagtttctatgtggta
ccaaaaactggcgaagttttgctaatggactccctactgggcctcccatctgcaatcaag
ttctatgtttttgctaaagaccatggttggccctgcagaatcagtaagggtgttgagatc
acggttaccccacgacagtggtgcccactgcgcccaggccagccaggggagttgggcagc
ctgggaagggcagggcggatgcatagggcattgttggactctggtagcatggtcttcctc
aatgtctccgaagatgcaagcatcggttctgtcgttatgagcctgagcccagccaggttt
caggcagcctcctttgagctggtttatccgaagacagatattaccccaatcaacgtgggc
aaggagagtggagatatcgtgatagccatgcgcctggacagggagactgaaccgttcatc
gaaatcactgtcaaaatacaagaggaacgagggcctgactggtacctgaccaaggtgaag
ctgagggtgacagatgtcaacgacaacgtccccgagtgggccatggagccttacccctac
ctggcagtggtgtcgcccgaggccccccctggggagctggtgtacccgctccatgctctc
gacggggatgagggcagtagcggcgaggtggagtacttcctggctgatggtggtaatggc
tgctttgcggtggacaagaagagtggtcacatcttgaccacaggtctccccctgcagata
gacagggagtatctgctgagtgtggtggcctttgacaggctgggcagccgcagtgctccg
gccatggtgtcagtcatagcaggacccagaacaccacagttcaccaagacatcttacgcc
atttccataccagagaacaccccagagggacagcccttcctggtgatgttcgccatctcc
ttccagaagcagccaatcagctacagcctgctgatcaaccccagcagcctgttcagaatg
cagcaggagacaggggagatcagcctgacccgcacgctagactatgagaatgaccaaaga
cgttacctccttatggtcagggccagcgaggagccagggggcctcagcagcgccatagag
gtccaggtggtgataacggacgagaatgactgtgtcccagaatttctccagtccatttac
agtgttgatggggtccctgagacagtaaccacagcaacctctctcctgcaggtgttagcc
agtgactgtgactcggggttgaatgcagaactcacttactacactctaagcccagacttc
agcatttcagcccacggcaccatcttccctgtgggccgtctggactacgagaggcccaac
cacctgtatgagtttgtggtgatggcagttgataatggggaggagcctcactctggtacc
gccaccatccgcctccgcatggccaatgtcaacgaccaggcccccgaattctcccagact
gtctatcggacttttgtctccgaggacgctggccccaacacactagttgccacggtactg
gctaaggacccagacggtgatggaatagtgtactcatttacagctggcaacgaggagggc
aactttgtcattgacagccagaaagggttgatccggctgcgctccaccccccctcccaag
ctccagggcctggagtatgtcctcaacgtgacggctacggacgacaacgcctccgggggg
ccacacccactctctgcaactgcccgggtcatcgtgggtgttgatgacgtcaataacaac
aaacccatctttgagaagtgtcagaagtacagggagcaggcatctgtgttggagaaccag
cccacagggaccttcgtgctgcaggtgcatgcggtggatgcagacgagggggccaatggg
aaggtcaagtatggcctgatgcacagagacagagccatgcctgccttcagagtccatcct
gacacaggtgtgatcgtgacggcacggcggttcgaccgggaacgtcagagagagtactcc
atcacagtgacggctacagactgggcagacgagcctctcatagggatctgtcaactcaac
gtcctcatccaggaccacaatgacaacagccccaagtttgagaacctgcgctacgagtac
tttctgagagaggacaccatgatcggcaccagtttcctgcgtgtggcggcgcacgatgat
gactttggcaccaacgccgtcgtcacctactccatgtcccaggagcagcctgagtacctg
agggtcaaccctgttaccggctgggtgtacgtcaaccagcccatatcacagaggtcctac
atcacacgggaagtagttgccacggatggggggaatcgcagcacatctgtggagctgtct
gtcaccattaccaatgtgaagaaccagcccccgcagtgggaaaaggacagctacagcgtg
gtcatcccagagaacacagccagggacacttccatcgtgacgatcaaagcaacctcgttg
ctaggcgaccccagggtgacttacaacctggaggagggcgtggtcccggagactaacatg
cctgtgcggttctacctgtcgcccaaccgcgaggacggctctgcctccatcctggtgtcg
gagccgctggactatgagaccacacccagtttctccctgagggtgcgggctcagaacgtg
gcggcagtaccactggctgcattcaccaccatctatgtcaacgtcacagacgtgaacgac
aatgtgcccttcttcacctcctccatctatgaggcatcagtgactgagggagccaaggtg
gggaccatggtcctccaggtgtctgctcacgataaggacctgggtctcaatggacagatc
acctacaccctcctgagtgacagtagtggggaccaccgtctgtttcgtgtggatccagag
ctaggctccatctatacagaggcggtttttgaccgcgaggcacagggatcctacctactg
gaggtgcagtctgaagacggcatggagtcagcacggcccgggaggaacaaacagcccaac
tttgacacagcatatgtgcgggttttcatcagcgacgtgaacgataacaaacccgtcttt
gctcagcgtctctatgaagtcggcattgacgaggatgcagatgtcggcctggctgttgtc
accgtcggagctaatgacgaagatgaaggtgccaacgccaagctacgttaccagatcaca
tcgggcaacaccggaggggtgtttgacatggagcctgaagtgggaaccatcttcatcgcc
cagcctctggactacgagctgcagaagaggtacaagctgctggtgctggcatcggatggg
aagtgggaggactacgccgctgtggtggtcaatgtggtcaacaagaacgacgaggctcca
gtcttctctatgaatgagtactacggctcagtgaccgaggagctggatggctcgccggtc
tttgtgcttcaggttacagccatagacccagacaaggatgcagaccaagtcgccgtgcgc
tactctcttcatggtcagggatcggagtctaagtttgtgatcgacgagatcacagggaaa
atgtacgcccagaagacactggaccgcgaggagcgggcagtgtggcgctttgtggtcctg
gccacagacgaggaaggggaggggctcaccggcttcactgatgtcatcatcaacgtgtgg
gacatcaatgacaatgcgccttccttcgtctgcgtgcccgacggctgtcacggcaacgtg
gccgagaactcacccccaggtaccttcgtcatggagatgacggcgacggaccttgatgac
acggcggtgggtcagaacgccatcctctcctaccgtatcatcgagaacgtgtatgacgca
ggagccgccaacttcttcaccgttgacgccagtacaggcaccatctcagttgcaaccggt
gggttggacagggaggtggcagagcggcaccagctggtggttgaagccaaggatggagag
ggtatgatgggcacggctaccgccactatcattatcacagacctgaatgaccataccccc
cggttcaaagacaagtggtgcggggctcgtgtgtctgagagcagccctccagactcaacc
gtgctgaagctggatgctgtggacccagactcggggcctcacggcctgctgggcttcagt
gtggtggcaggggaccagggggagaggttctacatggtgagccacaaagcagagcagtct
ggaactctgaggctgagaaagaggctggattacgagaggcccggcgagcaacaattcaac
ctcaccattcgtgtggaggactccgacttctccagcctcatccactgcatcatccaggtg
gtggacgagaatgaccatgtcccagtgttcgcccccacctcctacaccctcgcccctctg
ccagaagatgttgcagtgggaaccagtatcacccaggtgacggccagcgacttagactct
gacctgaatggggaaataatctatagcatctccccagagtcagacctgtacggccatttc
actgtggacggaaatggcatcatgaccgtgacctgcccgctggacagagaaattgtggca
gagtaccagctggttgtcctagcgacagaccagggtagtccagccttgacgggtagcacc
acggtccagctgagcttgctggatgtaaatgacaatgggccagagctggaggtgacctac
aaccctgtcctctgggagaatagccctgctccacaggtggtgtggctcaaccagacctcc
accctgctccacgttatcgacagggactcccttgagaacgggcctcccttctccctctct
ctccctcgcatctacgcccctgacttccacctgcaagaccatggcgatggcacggcaacg
ctcacggcactgcaccgcttcgaccgcgagcggcagagggagttcttcctgcccgtggtc
atgacggacagtggtcgtccaccaatgacggtcaccaacacactcaccgtcactgtgggc
gaccaaaacgacaatgcccaccaggagggagagaaggagatttacgtccacagcaggagg
ggaaagatgcagactacttcactgggcaaggtctatgcccctgatcccgatgattgggac
aacaagacctacaccttagatgcaagaggaatgaagtatttcaccttagacaagagtaca
ggtcacctggccatcagaccgaataccctagcgggcagctactatctcagagtggtcgtg
tcggatggggtgtggccggacgtggtctcgggggtcacagttcacgtgcgggagctggag
gaccaggcaatccatttgtcagcctccctgcgtctcacaggcatcactgccagggatttt
attgagtcccaggtggacaagacgagtcgacaggatatgttcaggggcttcctgtctgaa
cacctgtccgtcagcttaggcgccatcaacgtattcagcctgacagacgtaggactgaag
acgctggacgtgcgcttctctgtgcacagcgacagctaccttcgcccagagaaactacat
ggattccttgcggtgcataagaagaagctgcagtctctgctgcgggtgaatgtgtcccag
gtacaggtggatgagtgtatgtacacagactgcagggcgggtgagggttgctccacatac
ctcagtgtcagtgacacgcccaccctggtggatgctggcaacaaggccctggtgtctgtg
acagtgacttcctcagccgtgtgtggctgcaccgccagggaccgtgtccaccaggcctgt
ttctcctaccccacaaacccctgcttcaatggaggcacctgcatggacaccctcagcggg
tacagatgccagtgcccaccgcagtacgagggtcctgagtgccagcagacagggcgaagt
ttccttggcaacggctatgcctggtttcctcccataaggccgtgctttgatagccatctc
tccctggagttcatcacaggggctgaggatgggctgctgctctacagtgggcccctggcc
accctgcttcccagagacccagaggactacatggccatagagttgattggtggaacacct
agcctgaaaatcaaccatgggtctggaaccctggtcctgcagttgccgggaaatgtggtt
gtgtccgacaaacgctggcaccgtctagatgttaggagcaacagtaaagaagtgcgtttc
accctggatcgctgctccagtgccattgtcatggagacagagggagtggacagctgggcc
atgaccgaggaccgctcttcttgtgaagtcagaggagtcacgcccaatagggacaggtac
ctgaacgggagtcaggtgttgcagctgggtggtgtcaacgaaaacatgtcctatgagtat
ccccagctgcagcacaagcacttcagtggatgtctgcgcaacctggttgtggatagtatg
ctctatgaccttggttatccctcagagtcctccagcagtgccccaggctgctctctgact
gatgggaactgtgtaaacatgggtgtaccagcctgtggcgccagggggcgctgtaacggg
cagtgggactccttccgctgccagtgtgggcccggttacgcagggatccactgtgaagac
gaagttccagagttctccttcgatgggaggaggagccatgtccagtaccaggtgggctgg
tctctcccggcccgtcacaccagcgtgcagctccaggtgcgaacccacgtccccagcggt
gtcctcctcagtctcctctcccaggagcagaatgaatacttgcgtctcgaggtgtttcag
gggctactggctgtcttttacaacctgggtgacagactctacaacctcaccctgcccttc
cagcgccttgacaacggagaatggcacgaggtggagctggatcgacatggcaaagagttc
acccttcgattggatggtggcggcgggaggcaagaggtcacagccgctcctgggcagagt
caggagatagtcatcgatcaaacagtggtgatgctgggaaactcattcccttcaggaaac
aaccacagcttcctagggtgtctgcgagacctgaggctgaacgggaggcccatgcccatg
gcaaagcagccctccgtggggtccaagggcctccaggtggtcacatcccagggggtctcc
ccaggttgcccctcagacgcctgcaggaaacaccagtgctatccccccttcatatgtgtg
gacctctggaggaaacacgagtgcaggtgcccccctggtcacatgacgaaggagaatgac
tcgagcaaagtgtgtgtctacacgctgtgcgtcagcaggccctgtcgccacggcacctgt
gtggcccactcgcctgccaagtactcgtgtcactgcaccgagggctaccgtgggcgccac
tgtgaggtctctctgacgctctaccacaacaacgacaacaacactctgagcctcagctct
gcgtttgccatcagtatctgtgtcctggccttcctagtgctgatgatgggcctgtccctc
tactcctgctggaggagacacaagggcctgaaggagggcatctaccacgtatccgcacac
cacggagaatgggaggacatccgagagaacgtgctcaactatgacgaggagggtggaggg
gagcaggaccagaatgccttcaacatggtggagttacagaggtctctgcggcccagtcca
gcccagtcactttggtacagctacccacaatgcatcataccctcatcctaccctcagacg
gccaagcccccagacacgaagaatgggaccaaaccaaaaggaccaaacggatccaaaaac
ggcagcacagcaatcgccctgcgcctggcccaccctccgtccgggtcagccaccctcacc
tctcccattgcaatgcggcgttcccacaagtccctgtccttctccagtcaggacctggcc
cgctacctgtgtgaggtcatcagggacacagaccactccacaggggacaaccccggctac
atgacctcactgcgtcccctgtccaataaggcgcagcgtggcaggctggccgtgcgctcg
ctcagctccctcagcgatgaaggtcaggggtcggaggttagggttcatgggggtcaagag
agcctgaaaggtcagagatcccagagcccacggctggacaggctcaaagccctgcgagct
gttgccagtgaactcagagtggacggtgctgtggactctgctgccgccaagagcacagag
ggacagaaggacaaagtaaaggatagagagtgcagggtgcagcccaactgtgagaagagc
ggatga
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integrated database retrieval system
