Oncorhynchus gorbuscha (pink salmon): 123990458
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Entry
123990458 CDS
T07892
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123990458 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123990458 (hbs1l)
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123990458 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
HBS1_N
MMR_HSR1
AAA_22
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
123990458
NCBI-ProteinID:
XP_046146958
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Position
LG12:3420454..3504702
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AA seq
719 aa
AA seq
DB search
MSRHRNVRGYNYDEDLDDDDLYGQSVDDDYCISPATAAQFIYSSRQERPNVEPPLEEEGM
EEDEAIHTSPTLTHNLNPLCVCVCVSTGKLYSCLDLMRAVLGDAMPESVLTQAALRCAFD
PQRALDAVLSVESAGLPPLDARTNNDAPLPQRANKETAVVPRANQEASAAPRPEKAKDRE
AGQCQLDSEVLPKVARMTVSGKKQTMGFDVPSTEENGVVPSPSVHRGGSPDDMTMKTSPE
TPSKRPQTPSKGFGGAEEPPSVPTPGRTPGKAKQQLNVRAELEKRQGGKSLLNLVVIGHV
DAGKSTLMGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERNRGVTMDVG
MTKFETASKVVTLMDAPGHKDFIPNMITGAAQVRVCITCVSYVVDASRGEFEAGFEAGGQ
TREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFKEIISKLGHFLKQAGFKDSDVFYVPTS
GLSGENLTTKSSALALTSWYSGPCLLEQIDNFKPPQRSIEKPFRLCVSDVFKDQGSGFCV
TGKIEAGYIQTGDRVLAMPPNETCTVKGISLHDDPLDWAAAGDHVSLTVTGMDIIKINVG
CVFCDIKEPIRACSRFRARVLLFNIEVPITQGFPVVLHYQTISEPATIRKLVSVLHKSSG
EVLKKKPKCLGKGMNAMVEIQTQRPVALELYKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacagaaatgtccgaggctacaactatgatgaagaccttgacgatgacgat
ctgtatggacagtctgttgacgatgactactgcatctcccctgcaacagcagcccagttc
atctactccagcaggcaggagagacccaacgttgagccacccctagaggaggaggggatg
gaggaagatgaggccatacacacctctcccaccctcacacacaacctcaaccccctgtgt
gtgtgtgtgtgtgtctccacaggcaagttgtactcgtgtctggacctgatgcgtgcggtg
ctgggtgatgccatgccagagtcggtccttacccaggctgccttgcggtgcgccttcgac
cctcagagagccttggacgctgttctctcagtcgaaagcgccgggctgccgcccctggac
gccaggaccaataatgacgcaccgctgccgcagagagcaaataaggagacagcagttgta
ccaagagccaatcaggaagcctcagctgcaccgcgaccagagaaagctaaggaccgtgag
gcggggcagtgtcaactggactcagaagttctgcctaaagtggcccgcatgaccgtctca
gggaagaaacagaccatgggctttgacgtgccaagtacagaggagaacggggttgtcccc
agcccctccgtccatcgtgggggtagccctgatgacatgaccatgaaaaccagccccgaa
accccctccaagcgtccgcagacaccctctaaagggttcgggggggcagaggagccccct
tccgtccccaccccaggacgtaccccggggaaggccaagcaacagctgaacgtcagggcc
gagctggagaagagacaagggggcaagtctctactcaacctggtggttataggtcatgtg
gatgctgggaagagcactctgatgggtcacctgctgtacctgttgggaaacgtcaataaa
cgcaccatgcacaagtacgaacaggagtccaaaaaggctggcaaggcctcgttcgcctac
gcatgggtcctggatgagaccggggaggagaggaacaggggtgtaaccatggacgtgggg
atgactaagtttgagacggcctctaaggtggtgactctgatggacgctcctggacacaaa
gacttcatccctaacatgatcactggagcagcccaggtacgtgtttgtataacctgtgtc
tcctacgtggtagatgccagcagaggtgagtttgaggcagggttcgaggcaggtggtcag
acgcgagaacacggccttctggtccgttcgttgggcgtcacgcaactcgcggttgccgtc
aacaagatggaccaggtaaactggcaacaggagcgattcaaagagatcatctctaaactt
ggacatttcctgaaacaggctggatttaaggactctgatgtgttctacgtgccgaccagt
ggtctatcaggagagaacctgaccactaagagttctgctctggcgctaacatcctggtac
tctggaccatgtctgctggaacagatcgataatttcaaaccaccccagaggtcgatagaa
aagcccttccgactgtgtgtctcggacgtcttcaaagatcagggctcagggttctgtgta
acagggaagatcgaggcgggctacattcagacaggagaccgagtactggccatgcccccc
aatgagacatgcactgttaaaggtatctctctccacgatgatcctctggactgggcagca
gcaggagatcatgttagtctgaccgtcactggcatggacatcatcaagattaatgtgggc
tgtgtgttctgtgacattaaggagccaatcagagcgtgttcccgcttcagggccagagtc
ctgctcttcaacatagaggtccccatcacacagggcttccccgttgtgttgcactaccag
acgatcagtgaaccggccaccattaggaagctggtcagcgttctccacaagagcagcgga
gaggtgctcaagaagaaacccaagtgtctgggtaagggtatgaacgcgatggtagagatc
cagacccagaggcccgtggcgttggagctctataaggacttcaaggagctgggacgcttc
atgctgagatacgtagggtcaaccatcgctgccggggtcgtcaccgagatcaaagaatga
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