Oncorhynchus gorbuscha (pink salmon): 123990514
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Entry
123990514 CDS
T07892
Symbol
papola
Name
(RefSeq) poly(A) polymerase alpha isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123990514 (papola)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123990514 (papola)
Enzymes [BR:
ogo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
123990514 (papola)
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
123990514 (papola)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
DUF6431
Motif
Other DBs
NCBI-GeneID:
123990514
NCBI-ProteinID:
XP_046147024
LinkDB
All DBs
Position
LG12:10274663..10294196
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AA seq
738 aa
AA seq
DB search
MRGCQSHVCNKNKEKEKERKKGRASSPSTNQVLLGRETPKHYGITSPISLAQAKEADLVL
THRLTEALKPYGVFEEELELQRRIHVLGKLNTLVKEWIRDVSETKNLPASVIETVGGKIF
TFGSYRLGVHTKGADIDALCVAPRHVERTDFFSSFLDKLKEQEEVKDLRAVEEAFVPVIK
LSFDSIEIDILFARLALQTIPENLDLRDDGLLKNLDIRCIRSLNGCRVTDEILHLVPNIE
NFRLTLRTIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAVASTLVHKFFLVFSK
WEWPNPVLLKQPEDCNMNLPVWDPRVTPSDRYHLMPIITPAYPQQNSTYNVSASTRAVMV
DEFKQGLAITDDILQSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQHLEWVGLVESKI
RILVGNLEKNEFITLAHVNPQSFPGPKESMEKEEVSTMWVIGVIFKKMEASENLNVDLTI
DIQSFTDTVYRQAMNSKMFEADMKIQAMHVKRRQLHQLLPDLVMPKRRKHSTEGLRQMND
SSLDLSLDSDNSMSVPSPTAMPATVPTSTPVKCGPLGPPPSPLAAAAGQPEAPAVKRPGS
PMQEERKRFKSDAEDSAVEKKPSGDTVPTSLTPSPPPTMGPPAAPHTSRQEMLEEENPSP
VPETRTTENGAAAGEECTTVEEQVNEDSMCEEMPASEGEGKMEADIKRMVSADLSDVPLL
PANPIPVVKNSIKLRLSR
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggttgccagtcccatgtttgcaacaaaaataaagaaaaagagaaagaaagaaag
aagggaagagctagcagtccgtctacaaaccaggtgttgttgggtcgggaaacacccaag
cactatgggatcacttctcctatcagcctggcccaagccaaggaggctgacctggtcctc
acacacaggctgactgaggccctgaaaccatacggggtgtttgaagaggagctggaacta
cagcgcagaatacatgtgttgggaaaactgaacacactggtgaaggaatggatccgtgat
gtcagtgagacaaagaatctgcctgcctcagtgattgaaacggttggagggaagatcttc
acatttgggtcctacaggttaggagtccacactaaaggtgctgacattgatgccctgtgt
gtggctcctcggcatgtggagagaacagacttcttctcctcgttcctggacaagctgaag
gagcaggaggaggtcaaagatttgagggctgttgaggaggcatttgtccccgtgataaag
ctgtctttcgacagcattgagatcgacatcctgtttgctcggttagcgttgcaaaccatc
ccagagaatctggacctccgagatgacgggttgctgaagaaccttgacatccgctgcatt
aggagtctcaatggttgtagagttacagatgaaatcctccatcttgtgcccaacattgag
aacttcagactgacactgaggaccatcaagctgtgggctaaacgtcataacatctacagt
aatatcctgggcttcctgggtggagtctcctgggccatgctggtagccaggacctgccag
ctctaccccaacgccgtggcctccacccttgtacacaagttcttcctcgtattctccaaa
tgggaatggcccaaccctgttctcctgaagcagccagaggactgcaacatgaacctgcca
gtctgggaccccagggtgacccccagtgaccggtaccacctgatgcccatcatcacacca
gcctacccccagcagaactctacctacaacgtctctgcctctacgcgtgccgtcatggtg
gacgagttcaaacagggtctggccatcacagatgacattttgcagagtaaagcagagtgg
tccaaactatttgaagcaccaaacttctttcagaaatacaagcattatattgtgttgcta
gcaagcgcccccaccgagaagcagcacctggagtgggttggtctggttgagtctaagatc
aggatccttgtgggaaacctggagaagaatgagttcataacgttggcccatgtcaacccc
cagtcattccctggacccaaggaaagcatggagaaagaggaggtcagcaccatgtgggtg
ataggggttatctttaagaagatggaggcatcagagaacctcaacgttgacctgactatt
gacatccagtcctttactgacacggtgtaccggcaggcgatgaacagcaagatgtttgag
gcggacatgaagatccaggccatgcatgtgaagaggagacaacttcaccagctactgccc
gacctggtcatgcccaaacgcaggaagcactctacagaggggcttcgtcagatgaatgac
agcagtctggacttatcgttagacagtgacaacagtatgtctgtgccatcccccacggcc
atgccagccactgtgcccacgtcaaccccagtgaagtgtggcccactgggtccccctcca
agtccccttgcggctgcagccggccagcctgaggccccagctgtgaagagacctggctcc
cctatgcaggaagagaggaagcggttcaaatcagatgctgaggattcagctgttgagaaa
aagccttcaggagacacagtccccacaagcctgaccccctctcctccacccaccatgggc
cccccagcggccccccacacctctcgccaggaaatgctggaggaggagaacccctcccca
gtcccagagactaggacaacagagaatggggcagctgccggagaggagtgcaccactgtg
gaggaacaggtcaatgaggacagtatgtgcgaggagatgcctgcttctgaaggggaaggc
aagatggaggcagatattaagcgaatggtcagtgcagatctgtctgatgtgcccctcctg
ccagccaaccccattccagtggtgaagaactctataaagcttcgcctcagcaggtag
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