Oncorhynchus gorbuscha (pink salmon): 123990581
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Entry
123990581 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-1-like
KO
K16498
protocadherin delta 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
123990581
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ogo01009
]
123990581
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ogo04515
]
123990581
Protein phosphatases and associated proteins [BR:
ogo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
123990581
Cell adhesion molecules [BR:
ogo04515
]
Cadherins
Protocadherins
123990581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
PepSY
PDGLE
Fibulin_C
Glyco_hydro_26
Motif
Other DBs
NCBI-GeneID:
123990581
NCBI-ProteinID:
XP_046147159
LinkDB
All DBs
Position
LG02:68512164..68635586
Genome browser
AA seq
1553 aa
AA seq
DB search
MSESEVSLYVGKGVWMSESEVSLYVGKGVWMSESEVSLFVGKSVWMSGSEVSLFVGKSVW
MSGSEVSLYVGKRVWMLGSEVSLFVGKGVWMSESEVSLFVGKGVWMLGSEGVWMSGSEVS
LYVGKGVWMSGSEVSLYVGKGVWMSGSQGVWMSGSEVSLYVGKGVWMLGSEVSLYVGKSV
WMSESEVSLYVGKGVWMLGSEVSLYVGKGVWMSGSEVSLFVGKSVWMLGSEVSLFVGKGV
WMSESEVSLFVGKSVWMSGSEVSLFVGKSVWMSGSEVSLYVGKGVWMLGSEVSLYVGKGV
WMSGSEVSLYVGKGVWMLGSEVSLYVGKGVWMSGSEVSLYVGKGVWMLGSEVSLYVGNLV
PDFMELHLGAVLLWVLVLDCCGWAETGILYRVQEEQPPSTLIGSLASDQGLPDSGHLYKL
EVGSPYLRVDGKTGDIFTTEIPIDRETLRDCRSIVRGKPCFLEFEVSVTDLIHNQSPRLI
EGRIEVQDINDNTPQFPSPVLTISVPENTHLGALFSIPLATDRDSERNGVADYALTAGPD
AVTLFGLQVAEDRGEKLPQLIVLGSLDRELKDSYDLTIKAVDGGNPQRYSSALLRVVVAD
ANDNAPKFEKATYEAEVSENSPVGHSILQVKANDSDMGPNGEIEYTLHQALDPVPKLLRI
DRSTGIIYVKGPLDREEISDLTFYVVARDKGPQPKSSKTFVTIQVTDQNDNSPAVEIRGI
GLVTHSDGVANISEDMPVGTAVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASDSSTNK
RKYFLQTTTPLDYERVREYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPVFSPNLFEV
AFAEENQPGDKVVDVVATDADSGTNAELVYSIVADTSTRGLFEIDPDSGEVRARSSLDRE
HKERYEFRVTASDKGSPSHRGTATVVVKVLDRNDNDPKFMLSGYSFSVLENMPPLSAVGM
VTVLDMDQGENARVQLSVEPDVGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDGGEP
PRSSYVGVTINVLDENDNDPVVTKPSNSSFRLLSPLAAPESRVELVEAEDLDTGPNAELV
FSITGGNPYDLFSISSTTGEITLAKELTRKHGGLHRLVVRVSDAGKPARHATAMVHIYVN
ETIANVTLVEALVGHSLYTPLETDIAGDPDYGLAAQRSNIVYGSLAGVAGVVMVIVVVVF
IRHRIQRETKSGYQAGKKETKDLYAPKQGPKNGKGKRGRKGKPSKSPKPLGEEEEVSLQK
SLKFNLDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQDL
PATNTFVGTGGDDNSTGSDQYSDYSYKASQPKYNSKQLPHRRVTFSTANPVQDLQDASQH
SYYDSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGEMEHPENDIRSIPDVAM
TGNCTQECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSARLGGE
EHRAHLPPSRSAYSNSGHAPSQDFPLEEVPLSVTTEFPSTSPPSHTPKREIYL
NT seq
4662 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtctgaggtgagtctgtatgtgggtaagggtgtgtggatgtcggagtctgag
gtgagtctgtatgtgggtaagggtgtgtggatgtcggagtctgaggtgagtctgtttgtg
ggtaagagtgtgtggatgtcagggtctgaggtgagtctgtttgtgggtaagagtgtgtgg
atgtcggggtctgaggtgagtctgtatgtgggtaagcgtgtgtggatgttggggtctgag
gtgagtctgtttgtgggtaagggtgtgtggatgtcggagtctgaggtgagtctgtttgtg
ggtaagggtgtatggatgttggggtctgagggtgtgtggatgtcggggtctgaggtgagt
ctgtatgtgggtaagggtgtgtggatgtcggggtctgaggtgagtctgtatgtgggtaag
ggtgtgtggatgtcggggtctcagggtgtgtggatgtcggggtctgaggtgagtctgtat
gtgggtaagggtgtgtggatgttggggtctgaggtgagtctgtatgtgggtaagagtgtg
tggatgtcggagtctgaggtgagtctgtatgtgggtaagggtgtgtggatgttggggtct
gaggtgagtctgtatgtgggtaagggtgtgtggatgtcggggtctgaggtgagtctgttt
gtgggtaagagtgtgtggatgttggggtctgaggtgagtctgtttgtgggtaagggtgtg
tggatgtcggagtctgaggtgagtctgtttgtgggtaagagtgtgtggatgtcagggtct
gaggtgagtctgtttgtgggtaagagtgtgtggatgtcggggtctgaggtgagtctgtat
gtgggtaagggtgtgtggatgttggggtctgaggtgagtctgtatgtgggtaagggtgtg
tggatgtcggggtctgaggtgagtctgtatgtgggtaagggtgtgtggatgttggggtct
gaggtgagtctgtatgtgggtaagggtgtgtggatgtcggggtctgaggtgagtctgtat
gtgggtaagggtgtgtggatgttggggtctgaggtgagtctgtatgtgggtaatctggtg
ccggacttcatggaactgcacttgggagcagttctgttgtgggtcctggtgttggactgc
tgtggttgggctgagactggtatcctctaccgggtccaggaggagcagccccccagcacg
ctgattggcagcctggcatcagaccagggcctgccagactctggtcacttgtacaagcta
gaggtgggctctccgtacctgcgagtggatgggaagacaggggacatcttcaccacagag
atccccatagacagggagacattgagggactgccgcagtattgtcaggggcaagccctgc
ttcctggagtttgaagtgtccgtcacagacctaatccacaaccagagccccaggctcatt
gagggccgcatcgaggtccaggacatcaacgacaacacgccgcagtttccctcccccgtg
ctcactatctctgtcccagaaaacacccacttgggagctctgttctccattcccctggcc
acagacagggactcggagaggaacggggtggccgactacgccctcaccgctgggccagac
gcggtgacgctcttcggcctgcaggtggcggaagacaggggggagaagctaccccagctc
atcgtcctgggcagtctggaccgggagctcaaggactcgtacgacctgacaatcaaagct
gtggacggaggtaacccccagcgctatagcagtgccttgctgagagtggtggttgctgat
gctaacgacaatgctccgaagtttgagaaggctacgtacgaggcagaggtttcagaaaac
agccctgtgggacactctattttgcaggtgaaagccaatgactctgacatgggccccaat
ggagagatagaatacacactacaccaggcattagacccagtgccaaaactcctgcgaatt
gatcgctccactggcatcatctatgtcaaagggcccttggatcgggaagaaatcagcgat
ttgacattctacgtagtggccagggacaaaggtccccaacccaaaagctccaagaccttt
gtgacaatccaggtgactgaccagaacgacaattcccctgctgtggagatccgtgggatc
ggcctggtgacccacagtgacggggtggccaacatatcagaggacatgccagtgggcacg
gcggtggcccttgtccaggtgtctgacagggatgagggggagaatgcagtggtcacctgt
gtggtggcgggggacgtgccgttccagctgcgcccggccagtgactcgtccactaacaag
aggaagtattttctgcagactacaacccccttggactatgagagggtcagggaataccgt
gtggagattgtggctgttgactctggcaacccagctctttctagtactaactcattgaag
gtgcaggtgactgatgttaatgacaactccccagtgttttccccaaacctgtttgaggtt
gcctttgcagaggagaaccagccaggggacaaggttgtggacgtggttgccacggacgct
gatagcggaactaacgccgagctggtctacagcatcgtagcagacacatctaccaggggc
ctgtttgagattgaccccgattcaggggaggtgagggcacggagctcactggacagagag
cataaagaacgctatgagttccgggtcactgcgtctgataaaggttcgcccagtcacaga
ggaacagccacggtcgtggtcaaggtgctggaccgcaatgacaacgaccccaagttcatg
ctaagtggctacagcttctctgttctggagaacatgcccccactcagcgccgttggcatg
gtgactgtgctggacatggaccagggagagaatgccagagtgcagctctctgtggagcca
gacgtagggaagtttgtgattcagaatggaacaggaaccatcctgtccagcatctccttt
gaccgggagaaggagagcagctacaccttccgtctgaaggccgtagacgggggagagcct
cccaggtcctcctatgtaggcgttaccatcaatgtcctggatgaaaacgacaatgatcct
gtggtcaccaagccctccaactcctccttcagactcctgtcccctctagctgccccagaa
agccgtgtggagctagtggaggctgaagacctggacactgggcccaatgcagagctggtc
ttcagcatcactggaggaaacccttatgacctcttcagcatctcctccactactggggag
atcaccctggccaaggagctgacccggaaacatggtgggctccatcgcctggtggtgagg
gtgagtgatgcgggcaaacctgcacgccacgccactgccatggtgcacatctacgtcaat
gagaccattgctaatgtcaccctggtggaagcactggtgggacacagtctctacacccct
ctggagacagacattgctggtgaccctgactacggcctggcggcccagcgcagtaacatt
gtgtatggaagcctggcgggagtggcaggcgttgtcatggtgatcgtagtggtggtgttt
atccgccaccgcattcagcgggagacgaagagcggctaccaggctggcaagaaggagacc
aaggacctttacgcccctaagcaggggccaaagaatggcaaaggcaagcggggaaggaaa
ggaaagccctccaagtcccccaagcccttgggagaggaggaggaggtcagtcttcagaag
agtctcaagttcaacctggatggggtcaacgacagccccaggatccacctgcccctgaca
tatcccccaggcagccctgaccttggcagacactaccgctccaactctcccctaccatcc
atccagctgcaggcccagtctccgtcggcctcccagaagcaccaggcagtccaggacctc
cctgcaaccaacaccttcgtagggactggaggagatgacaattcaacaggctcagaccag
tactcggattatagctacaaggccagccagccaaagtacaacagcaagcagctcccccat
cgcagagtgacattctccacagccaatccggtgcaggatctgcaggatgcatctcagcac
agttactatgacagtggcctggaggaatccgaaacgcccagcagtaagtcatcatcaggc
ccccgcatcgggccactgaccctgcctgaggaccactacgagaggaccaccccggatggc
agcatcggggaaatggagcaccctgaaaacgatatacgatccattcctgatgtggcaatg
acggggaactgtactcaagagtgcagcgagctgggccactctgacgcctgctggatgcct
gggcagccctccccagtgcgcaagaccagaaacccccctaaactctccacattcgtgcct
taccaggagagaggcagcctgggccgcttggccaacgggagtgccaggctgggtggagag
gagcaccgagcccaccttccaccttcccggagtgcctattccaacagcggccacgcccca
agtcaggactttcccctggaggaggtgcccctgagcgtgaccaccgagttcccgtccacc
tcccctcctagccacacccccaaacgagagatctacctgtga
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integrated database retrieval system
