KEGG   Oncorhynchus gorbuscha (pink salmon): 123990643
Entry
123990643         CDS       T07892                                 
Symbol
xndc1
Name
(RefSeq) short transient receptor potential channel 2
  KO
K10803  DNA-repair protein XRCC1
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    123990643 (xndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ogo03400]
    123990643 (xndc1)
DNA repair and recombination proteins [BR:ogo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     123990643 (xndc1)
SSDB
Motif
Pfam: XRCC1_N
Other DBs
NCBI-GeneID: 123990643
NCBI-ProteinID: XP_046147278
LinkDB
Position
LG02:complement(75066272..75075962)
AA seq 652 aa
MAPVKIKHVVSFTSQDPKNCVENLCVVGGDSRSWLCNPQDRSGVLRAELQLERASYFGYI
DVGNCGSAFIQIDVGRSSWPLDQPYITLLPTATLMSPAESRQGTGLTGVRMFKKGDFLSE
GAEDSWDRVRVTCTQPFNKRSQFGLSFLRIRSPMEESEEGSTQTFKENQGQTTPDKSASG
VREWLSSPAVQRTFFGGAKGEGMVLSRTARMVLTASQAARRSLSLPSTSLSPSHTSSSGT
QNTETSSPPTAKPDATTHIPNQGKPGAHTATHNKGKPVGNMGNIHPHTASMACLSTVRSS
KENTSQRQLKRKPNSKSRQNQLNGTTSSKHGKPAVSNLATASAGGPQPVHPPGQQFDFCQ
VHEALLVAVDTNQPCVVKRLLHCLDQEESNKMDVQSFSLTIFDHSIDDFMAYLSITSYNA
MLSAFGLGREIRKLPRRNLSSRLDPPQYLCLEELCQEFAVELLGIVKVGPDGAEQEVVGP
DGAEQEVVGPDGAEQEVVGQDGAEREVGQDGAEQEVEPDGAEQEVVGQDGAEREVGQDGA
EQEVEPDGAEREVGPDGAEGTKQRKVKVMELKEKRVVGKINMTERWIKGPGRALENVTKK
AATASVVVENTARARVKILVEKVVPDRPMAAEAHRTLSSACRRGRGPSTEDQ
NT seq 1959 nt   +upstreamnt  +downstreamnt
atggccccagtgaaaattaaacacgtcgtttcattcacgtcacaggaccccaagaactgt
gtggagaacctatgcgttgtgggtggagacagcaggtcgtggctgtgcaacccccaagac
cgaagtggagtcctcagagcagaactgcagctggagcgagcctcatactttggatacatc
gatgtggggaactgtggatctgcgttcattcagattgatgtcggccggtcctcttggccc
ctggaccagccctatatcaccctgttgccaacagcaacactgatgagtccagcagaatcg
cgacagggcactgggctgacaggagtgagaatgttcaagaaaggtgatttcctgtcagaa
ggtgcagaggacagctgggaccgggtgagagtaacctgcacccagccttttaacaagcgc
tctcagtttggcctgtccttcctgcgcatccgcagccccatggaggagagcgaggagggc
tccacacagactttcaaagagaaccagggtcagacaaccccagacaaatcagcatcaggc
gtgagagaatggctgtcgagccctgctgtgcagagaaccttctttgggggagcgaaaggg
gagggtatggttctgagccggacagctcgtatggtcctcacagcgtcccaggctgccagg
cgttccctttcccttccttccacttccttgtctcccagtcacacatcatcctctggcact
cagaatacagaaacctcttcccctcccacagccaagccagatgcaactactcatatcccc
aaccagggaaagccaggggctcatacagctacacacaacaaaggcaagccagttggaaat
atgggaaatatacaccctcacacagcttcaatggcttgtttaagcacagttcgcagctcc
aaggaaaatacttctcaaagacagctgaagagaaaaccaaactccaaaagcaggcagaac
cagctgaatggcaccacctctagtaagcacggaaaacctgcagtctcaaacctggcgacg
gcatcagctggaggccctcaacctgtccatccacctgggcaacagtttgacttctgccag
gtccatgaggctctactggtcgccgtcgacaccaaccagccctgtgtggtgaagaggctc
ctccactgcctggaccaggaggagagcaacaagatggacgtgcaatccttctccctgacc
atcttcgaccactccattgacgactttatggcctatctgtccatcacctcatacaatgcc
atgctcagtgccttcggcctcggaagggagatccgtaagcttccaagaaggaacctgagt
tcaaggttagatcctcctcagtacctgtgtctggaggagctgtgccaggagtttgcggtg
gagctgctggggattgttaaggtggggccagatggagcagaacaggaggtggtggggcca
gatggagcagaacaggaggtggtggggccagatggagcagaacaggaggtggtggggcag
gatggagcagaacgggaggtggggcaagatggagcagaacaggaggtggagccagatgga
gcagaacaggaggtggtggggcaggatggagcagaacgggaggtggggcaagatggagca
gaacaggaggtggagccagatggagcagaacgggaggtggggccagatggagcagagggg
acgaagcagaggaaggtcaaggtgatggaactgaaggagaaaagagtggtggggaaaatc
aacatgaccgagaggtggattaagggcccggggagggcgttggagaatgtgactaagaag
gctgccacagctagcgtggtggtggagaatactgccagggctagggtgaagatcctggtg
gagaaggtggttcccgaccgaccgatggcagcagaagctcacaggacactgtcttcggct
tgcaggagggggaggggtccatcaacggaggaccaatga

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