Oncorhynchus gorbuscha (pink salmon): 123990669
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Entry
123990669 CDS
T07892
Name
(RefSeq) collagen alpha-1(X) chain-like isoform X1
KO
K19479
collagen type X alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
123990669
NCBI-ProteinID:
XP_046147363
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Position
LG12:20307364..20315044
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AA seq
672 aa
AA seq
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MDLRVTSVLLLLVALAVATPERYYHVQKVAKQQYPTKSHVQRESSEDSGESREGVAGEPG
IPGSPGEPGPMGPPGPPGKSGMGHPGPKGPAGNPGPAGYSAAGKPGNSGAPGKPGSNGMP
GEKGHTGATGAMGPRGSPGSPGSPGPAGPSSVGKPGPHGLPGGMGPRGEPGLKGHPGIPG
LPGQKGEKGVGIHGAPGANGAVGPMGPSGMPGQPGVGKSGATGYPGEPGKSGTPGRDGAP
GAMGLPGPKGHNGNPGVGAPGKSGENGSPGMPGNMGPKGPQGHAGQPGAPGMPGIGKPGA
NGMPGDRGSPGTSGTTGQKGEPGPTGYTGATGATGLTGPAGPQGARGFQGETGIQGLKGD
VGMVGAPGAKGTKGDQGHQGYAGKSGIPGAAGPPGATGATGHQGNKGGQGHTGAPGTPGA
NGLPGAKGHTGTPGGPGKPGENGIPGVRGPVGPSGTAGQPGLKGHPGLPGTPGPAGKMAK
GVSGPMGPPGAPGSRGHNGNPGAMGPPGPPGPPGEMVYHHEKSMPIKSHEIMMPHHEMMK
APMSAFSAVLTRAYPSAGSPIQFNQIIYNGEQHYDSQTGIFSCQVPGLYYFSYHMHVNGA
NALVALYKNGEPIMFSYDEYNKGFLDQLSGSTVLMLNAHDQVYIQVPDEETNGVFAADNV
HCSFSGFLIAST
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggacctcagggtgacaagtgttctcctcctcctggtggccttggccgtggcaacgcca
gagagatattaccatgtacagaaagtagccaagcagcagtatcctaccaagagccatgtc
caaagagaaagctcagaagacagcggggaaagtagagagggtgttgcaggggagccaggt
attccaggatcccctggtgagccaggacctatgggcccccctgggcctcccggcaagagt
ggcatgggacatcccggaccaaagggcccagccgggaaccccggacctgctggatactct
gcagctggcaagcctggcaactcaggtgctcctgggaaaccaggtagtaatggcatgcct
ggtgagaagggccatactggcgcaactggcgccatgggtccaagaggatctcccggttcc
cctggaagcccaggacctgctggaccctcttctgttggcaaaccaggcccacacggtctg
cccggcggcatggggccaaggggtgagcccggacttaaaggacatccaggtatccctggt
ctgccaggacaaaagggagagaagggagttggtattcatggagcaccaggtgcaaatggt
gcagtgggaccaatgggaccatctggtatgcccggtcaacctggagttggtaagtctggt
gccactggataccccggggagcctggaaagtcaggtactccaggtagggatggagctcca
ggagccatgggtctgccagggccaaagggccacaatggaaaccctggggtaggagcacca
ggaaagtcaggtgagaatggcagtccaggtatgcctggaaatatgggacctaaaggtccc
cagggacatgctggacaaccaggtgcacctggcatgccaggaattggtaaaccaggagct
aatggcatgccaggagacagaggatcaccaggtacatcaggaaccactggtcaaaaagga
gagccagggccaacaggttacactggggcaacaggtgctactgggcttacgggtccagct
ggtccccagggtgctagaggattccagggagagacaggtattcagggacttaaaggtgat
gtcggcatggtgggagctcctggggcaaagggaaccaagggagatcagggacatcagggt
tatgcagggaagtcaggtatccccggggcagcaggacctcctggtgcaacaggtgctacc
ggacatcagggtaataagggaggtcagggccatactggcgctccaggtactccaggtgca
aatgggcttccaggagcaaagggacacacaggcacacctggaggacctgggaaaccaggt
gagaacggtatcccaggggtaagaggaccagtggggccttcaggtacagcaggtcaacca
ggtcttaagggtcacccaggtcttcccggtacacccggcccagctggcaagatggcgaag
ggagtttctggtcccatgggtccacctggagctcctggttccagaggtcacaatggtaac
ccaggtgctatgggacctcctggcccacctggtccccctggtgagatggtctaccaccat
gagaagagcatgcccataaagtcccatgagattatgatgcctcatcatgagatgatgaag
gcccccatgtctgccttcagcgctgttctgactagggcttacccttcagcgggatcacct
attcagttcaaccagattatttacaatggtgagcagcactatgattcccagactggcatc
ttctcctgccaggtaccaggtctctattatttctcctaccatatgcatgttaatggtgct
aatgcattggtggcactgtacaaaaatggtgagccaatcatgttctcatacgatgagtac
aacaagggcttcttggatcagttgtctggcagcactgtccttatgctgaatgcccatgac
caagtctacattcaggtccctgatgaggagaccaatggtgtcttcgctgccgacaatgtt
cactgctctttctctgggttcctgattgcttcaacgtga
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